Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) AT4G10925 73 / 3e-15 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093700 [exp] 459 / 8e-165 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.003G141600 [exp] 76 / 4e-16 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.001G089600 [exp] 74 / 4e-15 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021504 [exp] 315 / 4e-109 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10022605 [exp] 276 / 4e-95 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10023064 [exp] 72 / 1e-14 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10032407 [exp] 72 / 2e-14 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10001815 [exp] 60 / 1e-10 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [poplar] [flax] AAA_lid PF02151 [poplar] [flax] UVR UvrB/uvrC motif CL0051 [poplar] [flax] NTF2 PF13474 [poplar] [flax] SnoaL_3 SnoaL-like domain
Representative CDS sequence Show only first row Show all	>Potri.016G105600.1 pacid=42810472 polypeptide=Potri.016G105600.1.p locus=Potri.016G105600 ID=Potri.016G105600.1.v4.1 annot-version=v4.1 ATGGCTCTACATGGATCTACCTTTTGCTACAAAGTAAATTTCATTGCTACAGGAGACTTTAAGAGACTGCAATGTTCATGGACTGACAGTTTCAAGAGAA CCCACAATATCTCTTCACCTTCCTTGAAGAAAAATACATTTTTGGCTGGAAGACTTCATTTTCATAAAAAGTTGCACATTGGAGGAGGAACCCAGTCCTA TGCACAGCCTTTCCGCTTATTTTCATTAAGAGCGTGTCAAGTAAGAAGTGAGGATTCAGAGGAAGTGTTAAGTGGCGAAAGCATTGTATTGGATGAGCAG ACCTTAATGCGTGAGCTTCAGGTTGCCATTGAAGAAGAGAATTATGCCCAAGCTGCAAAAATCAGGGACGGCCTTAAAGTACTCCAGGAAGATAGCAAGG CTTCAGTACTGGCAGCAAATGCTCGGTTTTATAATGCTTTCAGGAAGGGGGATCTGGCTGCCATGCAATCCCTTTGGGCAAAAGCGGATAATGTATGTTG TGTGCACCCTGGTGCGAGTGGGATTCAAGGTTACGACGATGTTATGGAAAGCTGGGAGCTTGTATGGATGAACTATGATTTCCCACTAGAGATTGAGTTG AAAAATGTTCGAGTGCATTTTAGGGGAGATGTAGGTTATGTTACATGTGTAGAATTTGTGAGAACAAAAGGCAGCAGTTGGGGGGCACAATTTGTCACAA ATGTTTTTGAGAAGATTGATGGTCAGTGGTTAATCTCCATTCACCATGCCTCACCTGTTGACCTGTAA
AA sequence Show only first row Show all	>Potri.016G105600.1 pacid=42810472 polypeptide=Potri.016G105600.1.p locus=Potri.016G105600 ID=Potri.016G105600.1.v4.1 annot-version=v4.1 MALHGSTFCYKVNFIATGDFKRLQCSWTDSFKRTHNISSPSLKKNTFLAGRLHFHKKLHIGGGTQSYAQPFRLFSLRACQVRSEDSEEVLSGESIVLDEQ TLMRELQVAIEEENYAQAAKIRDGLKVLQEDSKASVLAANARFYNAFRKGDLAAMQSLWAKADNVCCVHPGASGIQGYDDVMESWELVWMNYDFPLEIEL KNVRVHFRGDVGYVTCVEFVRTKGSSWGAQFVTNVFEKIDGQWLISIHHASPVDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09250			Nuclear transport factor 2 (NT...		Potri.016G105600 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.006G205000 [exp]	1.00	0.9831
AT1G07700			Thioredoxin superfamily protei...		Potri.014G029200 [exp]	2.44	0.9713
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	2.82	0.9772
AT4G28210		EMB1923	embryo defective 1923 (.1)		Potri.013G146900 [exp]	5.65	0.9594
AT2G38025			Cysteine proteinases superfami...		Potri.016G110400 [exp]	6.00	0.9732
AT1G54500			Rubredoxin-like superfamily pr...		Potri.005G049000 [exp]	6.70	0.9764
AT3G26740		CCL	CCR-like (.1)		Potri.001G066400 [exp]	7.74	0.9505	Pt-CR9.2
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	7.93	0.9679
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Potri.009G156900 [exp]	8.06	0.9716
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Potri.009G156700 [exp]	11.31	0.9676

Compare expression of checked genes

Potri.016G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.