Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54020 493 / 1e-177 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G37940 493 / 1e-177 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) AT2G29525 422 / 5e-150 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093800 [exp] 612 / 0 AT2G37940 490 / 2e-176 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) Potri.001G246300 [exp] 406 / 7e-143 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.005G193300 [exp] 42 / 0.0004 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035551 [exp] 519 / 0 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10027742 [exp] 514 / 0 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10021111 [exp] 494 / 5e-178 AT3G54020 462 / 1e-165 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10017199 [exp] 493 / 1e-177 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10040720 [exp] 407 / 1e-142 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF14360 [poplar] [flax] PAP2_C PAP2 superfamily C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G105700.1 pacid=42809378 polypeptide=Potri.016G105700.1.p locus=Potri.016G105700 ID=Potri.016G105700.1.v4.1 annot-version=v4.1 ATGACTGTTTACATTGGTCGCGAGGCTTCCAAGTTATGGAAGAGGATTTGTGCAGAGACGACAACAGAGATCAATTTACTTGCAGATAGTTGGAAATACA TTCTTACCGGTTTAATTTTTCAGTACATACATGGCTTAGCTGCCCGAGGAGTTCATTATCTACACCGCCCAGGGCCAACGTTGCAGGATGTTGGGTTCTT TCTTCTTCCGGAGTTTGGGCAAGATAAATCCTACATTAGTGAGACGGTGTTCACCTTCGTCTTTCTATCCTTTATCGTGTGGACTTTCCATCCTTTCATC TTCAAGAGCAAAAAGATCTACACAGTTTTGATTTGGTGCAGGGTTCTAGCATTTCTAGTTGCTTCTCAATTTCTGCGGATCATCACGTTCTATTCCACCC AGCTTCCAGGTCCAAATTATCATTGTCGTGAGGGATCAAAACTTGCCAGGTTGCCACATCCAGAGAGTGTATTTGAAGTACTCTTAATTAATTTTCCTCG GGGCATGACACATGGTTGTGGTGATTTGATTTTTTCATCGCACATGATATTTACTCTAGTCTTTGTCCTCACATATCAGAAGTATGGCACAAAAAGGTGT ATAAAGCAGTTAGGTTGGCTGATTGCTGTAGTTCAGAGCTTTTTAATTATAGCATCACGCAAGCATTATACTGTTGATGTTACTGTAGCGTGGTATACTG TTAATTTAGTGGTATTCTTCCTGGACAAGAAATTACCAGAACTACCTGATCGGACTGGTGGTGCTTCTTTCTTGTTGCCATTGAGTACCAAAGACAAGGA TAGCAAGCCTAAAGAAGAGAACCACAAGCTCTTGAATGGGAACTCAGTGGACCCTGCAGATTGGAGGCAGAGAACCCAAGTCAATGGCAAGATTCTGGAT GATGCCAATTTAGTCCATGCTGATGCTACTGCAATGAATGGTGCATAG
AA sequence Show only first row Show all	>Potri.016G105700.1 pacid=42809378 polypeptide=Potri.016G105700.1.p locus=Potri.016G105700 ID=Potri.016G105700.1.v4.1 annot-version=v4.1 MTVYIGREASKLWKRICAETTTEINLLADSWKYILTGLIFQYIHGLAARGVHYLHRPGPTLQDVGFFLLPEFGQDKSYISETVFTFVFLSFIVWTFHPFI FKSKKIYTVLIWCRVLAFLVASQFLRIITFYSTQLPGPNYHCREGSKLARLPHPESVFEVLLINFPRGMTHGCGDLIFSSHMIFTLVFVLTYQKYGTKRC IKQLGWLIAVVQSFLIIASRKHYTVDVTVAWYTVNLVVFFLDKKLPELPDRTGGASFLLPLSTKDKDSKPKEENHKLLNGNSVDPADWRQRTQVNGKILD DANLVHADATAMNGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.016G105700 [exp]	0	1
AT2G24300			Calmodulin-binding protein (.1...		Potri.018G111200 [exp]	2.82	0.8374	Pt-CBP60.8
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Potri.004G207300 [exp]	3.16	0.8577	CPK6,CDPK3.1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	6.00	0.8278
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	6.24	0.7815
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	12.32	0.7967
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.008G086300 [exp]	12.32	0.7356
AT5G17680			disease resistance protein (TI...		Potri.017G104901 [exp]	16.97	0.7696
AT5G17680			disease resistance protein (TI...		Potri.017G103701 [exp]	18.33	0.7994
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	20.97	0.7570	Pt-MEKK1.2
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	23.15	0.8232

Compare expression of checked genes

Potri.016G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.