Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56420 80 / 5e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G52680 66 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G26922 64 / 4e-11 F-box/RNI-like superfamily protein (.1) AT3G29830 64 / 1e-10 F-box/RNI-like superfamily protein (.1) AT1G61330 63 / 2e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G58880 62 / 4e-10 F-box/RNI-like superfamily protein (.1) AT4G26340 61 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 61 / 7e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G22280 59 / 2e-09 F-box/RNI-like superfamily protein (.1.2) AT3G03360 59 / 2e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106650 [exp] 181 / 3e-55 AT5G39040 60 / 9e-11 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G092301 [exp] 120 / 4e-30 AT1G13570 66 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.001G098901 [exp] 92 / 1e-21 ND / Potri.014G039700 [exp] 75 / 2e-14 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G042900 [exp] 72 / 2e-13 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.013G151700 [exp] 71 / 6e-13 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 67 / 7e-12 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.002G132400 [exp] 63 / 2e-10 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 62 / 3e-10 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034415 [exp] 58 / 4e-09 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 57 / 1e-08 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 56 / 3e-08 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10035669 [exp] 52 / 3e-08 AT3G58880 55 / 8e-10 F-box/RNI-like superfamily protein (.1) Lus10023037 [exp] 53 / 2e-07 AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028722 [exp] 53 / 2e-07 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10011048 [exp] 53 / 3e-07 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 52 / 4e-07 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10004852 [exp] 51 / 1e-06 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10023036 [exp] 48 / 7e-06 AT1G16930 66 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.016G106600.2 pacid=42809106 polypeptide=Potri.016G106600.2.p locus=Potri.016G106600 ID=Potri.016G106600.2.v4.1 annot-version=v4.1 ATGGAAGATCGTATCAGCGAATTGTCTGATGACATTCTGTCTTTCATTCTCTCCTTTTTGACAATGCAGGATGCTGTTAAAACAAGGTTACTTTCACATA GATGGAGATATCTCTCTCCACCGCTCTCCCATCTTCAGTTTGATGTTTTTACTCTGTTTGGAACCCACGGGGAAAGTAGTTCTAAGTTTGTTACAGCTGT CGATCAAGTTTTGCTAGCTTGCAGAGGTCCAAAAATAGGCACTCTCAAGGTCCGCTTTGGCCTAGGCGATGGCCATGCTTTCCATGTTGATAGGTGGGTT TCATTTTCCTCTGCAATGCAGGTTGAGAAAATAGCTTTTGACTTCTCATGCTCTCCTAAAAGTTGTGGAAGTTATAATTTTCCATGTCATATTCTTCCCG CTGATAAAGCATCTCATTTGAAGCATCTGTGCCTTGTTTCCTGCACGCTGAGGCTTTCTCCTAAATTCACAAGCCAACTCAATCCTTTAAGAACCCTGGA TTTGGATGGTGTACCCTTGGATCAAAGTGGCCTAGATATCATCACCTCTGCTTGTCCGAAACTTACGCTGTTGAGAATGATTGGTTGTGGACTGCCTAAG ATTGTGTGCATACACGGCCAACTCCTATGTCTGAAGACATTGATCATTCACGATTCTTTGATCAGTGTTGAGCTTAAGTCTATTAATCTTGAAATCTTTG AGTTTTTTGGTCATCCACGAAAACTCACTTTTGTTGACGTTCCGCATCTGAAAAAAGCACTAGTACGGTCGCTTTTTATTTATCGGAGGACATCGCCAAT ATGCAACGCGCTTGCGAAGGATCTTCCTCAGCTTCAGTTTTTGTCTCTGATAGTAAAGGATGAGGTGCTGCCCCTTCCTGCAACCAGTCCTAAATTCATC TCTCTTAAACAACTGGATCTGTCGATATGGCCGTTTATAGATTCTGACCTCCTCACAGTTATCTACCTGTTGAATGCCTCTCCTCTTCTGGAAATCCTAC AACTGAAGATCGGTCATCAAGGTGAGGGAAGAAGCAACGGAGAAAGAAGAGAATACTCAAGGCATACCCATTCACATTTGAAAGAAGTTAAAATGGAAGG ATTTCGTGACAAATGGAATGCGATGGAGCTCGCAATATATTTGCTAAAAAACACCATTGCACTTGAGCGAATGGTGGTTGTAGTCTCAGATTCCACCATG CAGATGGACCTAAGACAGAGGGTCGACAATTTATTGCAAAAGGAAAAAGGTAATTCAACGGCGGAACTGATCATCCTTTGA
AA sequence Show only first row Show all	>Potri.016G106600.2 pacid=42809106 polypeptide=Potri.016G106600.2.p locus=Potri.016G106600 ID=Potri.016G106600.2.v4.1 annot-version=v4.1 MEDRISELSDDILSFILSFLTMQDAVKTRLLSHRWRYLSPPLSHLQFDVFTLFGTHGESSSKFVTAVDQVLLACRGPKIGTLKVRFGLGDGHAFHVDRWV SFSSAMQVEKIAFDFSCSPKSCGSYNFPCHILPADKASHLKHLCLVSCTLRLSPKFTSQLNPLRTLDLDGVPLDQSGLDIITSACPKLTLLRMIGCGLPK IVCIHGQLLCLKTLIIHDSLISVELKSINLEIFEFFGHPRKLTFVDVPHLKKALVRSLFIYRRTSPICNALAKDLPQLQFLSLIVKDEVLPLPATSPKFI SLKQLDLSIWPFIDSDLLTVIYLLNASPLLEILQLKIGHQGEGRSNGERREYSRHTHSHLKEVKMEGFRDKWNAMELAIYLLKNTIALERMVVVVSDSTM QMDLRQRVDNLLQKEKGNSTAELIIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56420			F-box/RNI-like/FBD-like domain...		Potri.016G106600 [exp]	0	1
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.010G141201 [exp]	9.48	0.8102
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	12.12	0.8777
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	14.14	0.7610
AT3G26750			unknown protein		Potri.007G019733 [exp]	16.15	0.7689
AT1G13480			Protein of unknown function (D...		Potri.018G008300 [exp]	20.39	0.8183
AT1G33500			unknown protein		Potri.013G095400 [exp]	26.26	0.8337
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	26.98	0.8417
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126151 [exp]	31.52	0.7745
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.008G092900 [exp]	34.17	0.8323
AT5G04000			unknown protein		Potri.016G044001 [exp]	34.69	0.8355

Compare expression of checked genes

Potri.016G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.