Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39040 59 / 2e-10 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106600 [exp] 180 / 5e-55 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Potri.015G059700 [exp] 71 / 3e-14 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 71 / 3e-14 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 71 / 3e-14 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G051800 [exp] 69 / 6e-14 AT5G39040 627 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G092301 [exp] 62 / 3e-11 AT1G13570 66 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G097200 [exp] 61 / 5e-11 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G007201 [exp] 50 / 1e-07 ND / Potri.016G106725 [exp] 44 / 3e-06 AT1G66750 61 / 4e-12 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021145 [exp] 60 / 1e-10 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10007987 [exp] 60 / 2e-10 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G106650.3 pacid=42809992 polypeptide=Potri.016G106650.3.p locus=Potri.016G106650 ID=Potri.016G106650.3.v4.1 annot-version=v4.1 ATGTTTGTTGGTGTTCATTTTCTATCAAAAGCAGCCAGCAAATTCCGGCGGATTTGTTTTCTCTTTCTTCACGAGGCTGAAATTACCAAGATGTTAGCTG GAGAGATCTATCTGCTATATGAAATAGAACATTCCAACATTGTTAGACCACAAATAGCAAACTTGATTGAAAGGTTTTATGACCCAATCAAGGGAAAGGC TCTCTTAAATGGAGCTCCACTAGTAGAAATATCACACGAAAATCTACACAGGAAGGTGCTGCCCCTACCTGCAACCAGTCCTAAATTCATCTCTCTTAAA CAACTGGATCTGTTCATACGGCCATGTATAGATTCTGACCTCCTCACAGTTATCTACCTGTTGAATGCTTCTCCTCTTCTGGAAATCCTACAACTGAAGA CCGGTCATGAATGTGAGGGAAGAAGTAACGGAGAAAGAAGAGAATACTCTAGGCATACCCATTCACATTTGAAAGAAGTTAAAATGGAGGGATTTCGTGA CAAATGGAATGCGATGGAGCTCGCAATATATTTGCTAAAAACACCATTGCACTTGAGCGAATGGTGGTTGTAG
AA sequence Show only first row Show all	>Potri.016G106650.3 pacid=42809992 polypeptide=Potri.016G106650.3.p locus=Potri.016G106650 ID=Potri.016G106650.3.v4.1 annot-version=v4.1 MFVGVHFLSKAASKFRRICFLFLHEAEITKMLAGEIYLLYEIEHSNIVRPQIANLIERFYDPIKGKALLNGAPLVEISHENLHRKVLPLPATSPKFISLK QLDLFIRPCIDSDLLTVIYLLNASPLLEILQLKTGHECEGRSNGERREYSRHTHSHLKEVKMEGFRDKWNAMELAIYLLKTPLHLSEWWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.016G106650 [exp]	0	1
					Potri.001G293001 [exp]	5.65	0.7193
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Potri.019G049400 [exp]	8.83	0.8056
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.009G101200 [exp]	10.19	0.7564
AT1G77230			Tetratricopeptide repeat (TPR)...		Potri.005G184001 [exp]	11.48	0.7987
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.005G156250 [exp]	13.03	0.7891
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	21.77	0.6721
AT5G57610			Protein kinase superfamily pro...		Potri.006G170700 [exp]	22.49	0.7353
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	23.32	0.7518	ABF1.1
AT5G57610			Protein kinase superfamily pro...		Potri.018G095800 [exp]	24.67	0.7829
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.001G292700 [exp]	25.00	0.6433

Compare expression of checked genes

Potri.016G106650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.