Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01090 229 / 1e-72 Concanavalin A-like lectin family protein (.1) AT3G09190 180 / 1e-53 Concanavalin A-like lectin family protein (.1) AT3G09035 157 / 8e-45 Concanavalin A-like lectin family protein (.1) AT3G55550 103 / 4e-24 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 102 / 9e-24 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 102 / 1e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT3G54080 99 / 3e-23 Concanavalin A-like lectin family protein (.1) AT5G03140 100 / 6e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 99 / 1e-22 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 99 / 2e-22 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094900 [exp] 496 / 2e-177 AT5G01090 265 / 2e-86 Concanavalin A-like lectin family protein (.1) Potri.010G194700 [exp] 200 / 2e-61 AT5G01090 117 / 5e-30 Concanavalin A-like lectin family protein (.1) Potri.011G093700 [exp] 110 / 2e-26 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 109 / 4e-26 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 100 / 3e-23 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 99 / 1e-22 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088801 [exp] 96 / 2e-21 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 96 / 3e-21 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088632 [exp] 92 / 3e-20 AT2G37710 770 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021117 [exp] 318 / 4e-107 AT5G01090 210 / 5e-65 Concanavalin A-like lectin family protein (.1) Lus10017194 [exp] 301 / 3e-100 AT5G01090 219 / 3e-68 Concanavalin A-like lectin family protein (.1) Lus10027751 [exp] 231 / 6e-73 AT5G01090 166 / 6e-48 Concanavalin A-like lectin family protein (.1) Lus10035542 [exp] 226 / 5e-71 AT5G01090 175 / 1e-51 Concanavalin A-like lectin family protein (.1) Lus10040276 [exp] 110 / 3e-26 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004709 [exp] 100 / 4e-24 AT3G55550 257 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 102 / 2e-23 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 97 / 6e-22 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 96 / 2e-21 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10003224 [exp] 95 / 4e-21 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G107200.1 pacid=42809389 polypeptide=Potri.016G107200.1.p locus=Potri.016G107200 ID=Potri.016G107200.1.v4.1 annot-version=v4.1 ATGGCCAAGTTCAACATTCCCGCCTGCTTAACGGTGCTTACTTTCATGATTTCTCACTTGAAAATGCTAAATGCTGGCTCAAGTTACTCCTTTTCCTTTG AAACTTTTGATAAAAATCCAAACTTTCAGTCCAACATTGCTCTTTATGGTGATGCGAAGGTCGTTGGTAATGGTTCTCTTCAACTCACTCGCGCAGGGAG TTCAAGTGCTGGACGAGTCATGTACAAGCAACCCATCAAGCTTGTCGAAGGTATTTCTGGAAATATGGTTTCCTTTTCCACCAATTTCTCATTCTTGATG TCAACTGATGATGGAGATGGTTTGGCTTTTTTTTTGGTTCCTAGTGGTTTTTATGTGAGGATGTTTGATAACAGCCCATTTGGGCTATATTTAGGATCAG AGAAAAGTAGTCCTAAATTTGTTGCTGTTGAATTTGACACGTCGAGGGATGCTAAATTTGGTGATTTGAATGATAACCATGTGGGAATTGACGTGGGTGG TTTTGTGTCAGTCAAAGTGAGAAATGTTTCGTCCAATAATATGGTTTTGAATAGTGGAAAAAGATTGCATTCTTGGATTGATTATGAAGCGGGTTCGAAA AGATTAGAGGTTAGATTGAGTCAATCTGGTGATATAAAGCCAATTGATCCACTGCTCTCTTACCCAATTGACTTATCAAAAATGCTCAATGATGAGAGGG TTTTGATAGGCTTGAGCTCATCAAATGGAAATTCGTCTCAGACTTGCTTCCTCTATTCATGGAGCTTAAAGCTAAGGCATGTCCCCCATTGGATGCATTC TGAGCCACTGGACCCTCGGGCTTTTGCTAAACGTGTGAAACCAGTGGTAGTTCAAAAGAAGAGTGATTGTATTTTAAAAATCCTTGCTGCAATGATTTTT GGAACTGCTTGTGGAGCTCTGGGGGCATTCATGGTGTTATATCTTTGGACCATATTTGGCAATAGGCGCCCAGTTGTGCCAGAAGAGTGTTCTGCCCACC CTGGGGATTTTGAATACAAGAAAGTCAAAGTAGTTGTAGATAAAGCCGTCCAAGATGGCAAGCATTAG
AA sequence Show only first row Show all	>Potri.016G107200.1 pacid=42809389 polypeptide=Potri.016G107200.1.p locus=Potri.016G107200 ID=Potri.016G107200.1.v4.1 annot-version=v4.1 MAKFNIPACLTVLTFMISHLKMLNAGSSYSFSFETFDKNPNFQSNIALYGDAKVVGNGSLQLTRAGSSSAGRVMYKQPIKLVEGISGNMVSFSTNFSFLM STDDGDGLAFFLVPSGFYVRMFDNSPFGLYLGSEKSSPKFVAVEFDTSRDAKFGDLNDNHVGIDVGGFVSVKVRNVSSNNMVLNSGKRLHSWIDYEAGSK RLEVRLSQSGDIKPIDPLLSYPIDLSKMLNDERVLIGLSSSNGNSSQTCFLYSWSLKLRHVPHWMHSEPLDPRAFAKRVKPVVVQKKSDCILKILAAMIF GTACGALGAFMVLYLWTIFGNRRPVVPEECSAHPGDFEYKKVKVVVDKAVQDGKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01090			Concanavalin A-like lectin fam...		Potri.016G107200 [exp]	0	1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	3.74	0.7531
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	4.00	0.7690	GAL1.7
AT4G22290			Ubiquitin-specific protease fa...		Potri.011G022600 [exp]	4.00	0.8088
AT4G23500			Pectin lyase-like superfamily ...		Potri.001G100000 [exp]	10.95	0.7156
AT4G34760			SAUR-like auxin-responsive pro...		Potri.009G126000 [exp]	13.63	0.7890
AT4G35360			Uncharacterised conserved prot...		Potri.004G207700 [exp]	17.97	0.7238
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	18.33	0.7254
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	18.49	0.7224	CCRL2,CCR.9
AT1G70550			Protein of Unknown Function (D...		Potri.010G044300 [exp]	24.24	0.6881
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.015G105200 [exp]	28.28	0.7022

Compare expression of checked genes

Potri.016G107200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.