Plant FIBer expression Database

Potri.016G109100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37960 305 / 2e-98 unknown protein
AT3G54060 158 / 9e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G094600
[exp]
730 / 0 AT2G37960 322 / 9e-105 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021116
[exp]
318 / 2e-103 AT2G37960 267 / 5e-84 unknown protein
Lus10027749
[exp]
222 / 4e-67 AT2G37960 234 / 2e-72 unknown protein
Lus10035544
[exp]
155 / 7e-43 AT2G37960 151 / 6e-42 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G109100.1 pacid=42809226 polypeptide=Potri.016G109100.1.p locus=Potri.016G109100 ID=Potri.016G109100.1.v4.1 annot-version=v4.1
ATGGGGAAGCAAAACAAGTCCAAGAAAACCGATTCTCTTGGCAAAGGAGGAAAAGTAAGTCCGGTCCAAATCGCTTTCATTGTGGATCGCTATCTCTCTG
ATAACAGTTTAACCCAAACTCGCTCCATTTTTAGGACTGAAGCCTCTTCTCTCATCTCCAAATCTCCACTTCGAGAGGCACCGAAGAGTTTGTTGAGTTT
GGGGGCGATATTGAACGAGTATATATGTCTCAAGGAGCAGAAGGTGATTTTGGATCGAGAAAGGGTGCGTTTGGAGCAAGAAAAATTCAGGGTTCAGGAT
TTTTTGCATGGTATGCAAGATGTCATGAATGCTTATAATGCTAGTGCAAATTTAACAGCACCACCAGCCACTACACCTATGATTCAGGCTTCTATTACAA
GACCTGCGGTTATGGTTCCTCAAGCAGATCCATTTCGTGGATCTCCTGCAGCTGTAGGCTGTCCCATGCACAAATCACCTGGCTTTCCAGTCTCGACACC
CTCGAATACCACCATGGAGCGTAGCAATCTGTCCTCAATCACTAAGCACCCATCAACAAGAAAGCGAATGGGGTCAAATGCTGTTGCAGAATCTGTTCCA
GATGCTAAAAAGTCTCGCAGCAAGTTAGCTTCAAGGAAAATACCAAGTAAAGCTACATCCAAACAATGTGATAATGCTGCCACTGCTCAAGCAAATGTTC
AGCCCTTATCTCCTGTAATTGAATCATCAGCACAAAACGGCACACCCACTGGTCCAATAGTTCAAGCATCCGGTGTTGCTAAGAGTTTGTTCAATCAGCC
TTTACCATCCCCTCCAACTAGTTCATCTAATCCCAATACACCACCACAAGCATTTTGCTCTCAAAATGACAAATCTGCATCTCCAAGGGACATTTCTGCC
AATGCTCACTGCAGTAATAACAATACTCCTCAACAAGTCACTCCTACCAACTGCACGGTGATCACATCAGAGAGGGTTACAGTGAGCCCATTCAAAAACA
TGACGTACTACACCATGGAGAGAAATCAGTGTATCTCTTCTTCCTCTCCAGTTAAGACAACCTTGAAGAGGATGTGCAAGAGGGATTGTGTGAAGGGAAG
GCTAGACTTTGATGGTTCTGATGCAGCAGTGAACTTGGATGAATCAGTTGACAATGAGTTCTATACATCTGAATCTGACAAGGAAGGGGACATTTTTGAC
TTAGACCTGCCTAACTTAGACATGTTTGGGGCTAATTTCTCCTTCTCTGAACTGTTGGTTGATCTGGAACGTGATTGTGAAGGAAATGCTTGTCCATGCC
TGCCAGCCTTGGCAGCTTCTGCCGACACCATTTCTGGGTCATCACATGAATCTAGGGATGGTAATTTTGGGACCGATCAAGTCATGTCAGAGTTTTCCTC
TACCATGACTGAGGTGATTTCTGGAAAAGATACGCATTCGCAAGGTCCTGACATAACAGCTGTGAAGTCCATAACAAAATGTATAAGAATTTTAAGCCCT
GCTAAAAATCAAAGGAGTTCTTTGGATCAGGAGAATTGTTTGGCAAGTAACTGA
AA sequence
>Potri.016G109100.1 pacid=42809226 polypeptide=Potri.016G109100.1.p locus=Potri.016G109100 ID=Potri.016G109100.1.v4.1 annot-version=v4.1
MGKQNKSKKTDSLGKGGKVSPVQIAFIVDRYLSDNSLTQTRSIFRTEASSLISKSPLREAPKSLLSLGAILNEYICLKEQKVILDRERVRLEQEKFRVQD
FLHGMQDVMNAYNASANLTAPPATTPMIQASITRPAVMVPQADPFRGSPAAVGCPMHKSPGFPVSTPSNTTMERSNLSSITKHPSTRKRMGSNAVAESVP
DAKKSRSKLASRKIPSKATSKQCDNAATAQANVQPLSPVIESSAQNGTPTGPIVQASGVAKSLFNQPLPSPPTSSSNPNTPPQAFCSQNDKSASPRDISA
NAHCSNNNTPQQVTPTNCTVITSERVTVSPFKNMTYYTMERNQCISSSSPVKTTLKRMCKRDCVKGRLDFDGSDAAVNLDESVDNEFYTSESDKEGDIFD
LDLPNLDMFGANFSFSELLVDLERDCEGNACPCLPALAASADTISGSSHESRDGNFGTDQVMSEFSSTMTEVISGKDTHSQGPDITAVKSITKCIRILSP
AKNQRSSLDQENCLASN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37960 unknown protein Potri.016G109100
[exp]
0 1
AT5G23910 ATP binding microtubule motor ... Potri.015G146000
[exp]
3.46 0.6939
AT3G19650 cyclin-related (.1) Potri.001G295000
[exp]
4.89 0.6260
AT3G01516 unknown protein Potri.001G349700
[exp]
10.95 0.6269
AT4G02110 transcription coactivators (.1... Potri.014G122400
[exp]
14.49 0.6214
AT4G32290 Core-2/I-branching beta-1,6-N-... Potri.006G254800
[exp]
25.29 0.6390
AT4G02390 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE ... Potri.014G128200
[exp]
33.54 0.6003 Pt-APP.2
Potri.018G039701
[exp]
37.10 0.5797
AT5G14600 S-adenosyl-L-methionine-depend... Potri.018G120500
[exp]
37.78 0.5960
AT1G55610 BRL1 BRI1 like (.1.2) Potri.011G169600
[exp]
38.34 0.5887
AT5G49665 Zinc finger (C3HC4-type RING f... Potri.002G107902
[exp]
45.95 0.5235

Potri.016G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.