Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37970 260 / 7e-89 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 73 / 3e-15 SOUL heme-binding family protein (.1) AT5G20140 70 / 6e-14 SOUL heme-binding family protein (.1.2) AT1G17100 57 / 7e-10 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098500 [exp] 76 / 1e-16 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 69 / 8e-14 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.015G080000 [exp] 50 / 2e-07 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 50 / 3e-07 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 49 / 5e-07 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.001G379000 [exp] 48 / 1e-06 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 46 / 6e-06 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017193 [exp] 280 / 9e-97 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10027752 [exp] 259 / 7e-89 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10000227 [exp] 219 / 6e-73 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10000106 [exp] 186 / 3e-60 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1) Lus10035541 [exp] 130 / 6e-39 AT2G37970 131 / 2e-39 SOUL heme-binding family protein (.1) Lus10022712 [exp] 84 / 4e-19 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 66 / 1e-12 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10013345 [exp] 63 / 1e-11 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 55 / 7e-09 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 49 / 9e-07 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF04832 [poplar] [flax] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Potri.016G109400.1 pacid=42810663 polypeptide=Potri.016G109400.1.p locus=Potri.016G109400 ID=Potri.016G109400.1.v4.1 annot-version=v4.1 ATGGGAATGGTTCTTGGAAGGATTACTGTAGAAACTCCAGAATATGAAGTGATTCAATCCTCAAATGATTACGAAATCCGCAAATATGCTCCATCAGTCC TTGCAGAAGTCACATATGATCCATCTCAATTCGATGGGAAGAAAGATGGTGGGTTCATGGTTTTGGCTAATTATATTGGTGCCTTGGGCTATCCACAGAA CACCAAGCCTGAAAAGATAGCCATGACAGCTCCAGTTATAACTAAAACTGGTGGTGGAAGTGAAAAGATTGCGATGACAGCTCCTGTTGTGACTAAAGAG GGTAGTGGAGAGGGGGAAAAGATGGTGACGATGCAGTTTGTGTTGCCTGCTAAGTATAAGAAGGCAGAGGAGGCACCCAAGCCTGTGGATGAGAGGGTTG TGATAAGGGAAGAAGGGGTGAGGAAATATGGGGTGGTAAAGTTTGGAGGTGTGGCAACCGAGCAGGCGGTGGCAGAAAGAGTGGAGAAGCTGAAGAAGAG CTTGGAGAGAGATGGGCTTAAGGTGATTGGAGAATTTTTGCTGGCAAGGTATAATCCACCCTGGACTTTGCCTCCTTTGAGGACTAATGAGGTTATGATC CCAATTGAGTGA
AA sequence Show only first row Show all	>Potri.016G109400.1 pacid=42810663 polypeptide=Potri.016G109400.1.p locus=Potri.016G109400 ID=Potri.016G109400.1.v4.1 annot-version=v4.1 MGMVLGRITVETPEYEVIQSSNDYEIRKYAPSVLAEVTYDPSQFDGKKDGGFMVLANYIGALGYPQNTKPEKIAMTAPVITKTGGGSEKIAMTAPVVTKE GSGEGEKMVTMQFVLPAKYKKAEEAPKPVDERVVIREEGVRKYGVVKFGGVATEQAVAERVEKLKKSLERDGLKVIGEFLLARYNPPWTLPPLRTNEVMI PIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Potri.016G109400 [exp]	0	1
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	2.23	0.9273
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	9.94	0.8611
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	10.86	0.8996
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232700 [exp]	12.16	0.8335
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.017G068748 [exp]	12.28	0.7696
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.001G024300 [exp]	13.41	0.7997	ABA2.1
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.015G027300 [exp]	14.07	0.8395
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	14.28	0.8973	HY5.1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.002G056800 [exp]	19.39	0.8899
AT1G55340			Protein of unknown function (D...		Potri.013G057600 [exp]	19.89	0.8106

Compare expression of checked genes

Potri.016G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.