Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37975 77 / 2e-20 Yos1-like protein (.1) AT3G54085 73 / 1e-18 Yos1-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063000 [exp] 64 / 5e-15 AT2G37975 72 / 2e-18 Yos1-like protein (.1) Potri.010G194400 [exp] 64 / 5e-15 AT2G37975 72 / 2e-18 Yos1-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000226 [exp] 87 / 4e-24 AT2G37975 129 / 6e-41 Yos1-like protein (.1) Lus10017192 [exp] 87 / 4e-24 AT2G37975 129 / 6e-41 Yos1-like protein (.1) Lus10040237 [exp] 47 / 2e-07 AT1G51740 439 / 2e-154 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08571 [poplar] [flax] Yos1 Yos1-like
Representative CDS sequence Show only first row Show all	>Potri.016G109500.1 pacid=42809375 polypeptide=Potri.016G109500.1.p locus=Potri.016G109500 ID=Potri.016G109500.1.v4.1 annot-version=v4.1 ATGATAGGTTTCTGGACTTCTCTGGAAGGTATTCTGCTTTTCGCAAATGCATTAGCCATACTGAATGAAGATAGGTTCCTTGCTCCAAGGGGATGGACAC TGGCAGAACTCCAAGGAAGCACAAGAAATTCACTCAAGGGGCAGATTATTGGGCTCGTACATGCTTGCCAATTTATGAGACTACCCCTTATACTTCTAAA CATCATCGTTATCATATTGAAGCTGGTCCCTGTTTGA
AA sequence Show only first row Show all	>Potri.016G109500.1 pacid=42809375 polypeptide=Potri.016G109500.1.p locus=Potri.016G109500 ID=Potri.016G109500.1.v4.1 annot-version=v4.1 MIGFWTSLEGILLFANALAILNEDRFLAPRGWTLAELQGSTRNSLKGQIIGLVHACQFMRLPLILLNIIVIILKLVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036160 [exp]	2.00	0.9282
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036400 [exp]	3.46	0.9116
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.001G126500 [exp]	3.74	0.8789
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036340 [exp]	4.00	0.8924
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.002G115000 [exp]	6.32	0.8815
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Potri.001G400000 [exp]	8.12	0.8396	ATCOX17.2
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.018G085200 [exp]	8.36	0.8541	RCSTG.1
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	10.19	0.8723
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.013G045000 [exp]	10.48	0.8593
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	10.81	0.8553

Compare expression of checked genes

Potri.016G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.