Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54090 630 / 0 FLN1 fructokinase-like 1 (.1) AT1G69200 298 / 3e-94 FLN2 fructokinase-like 2 (.1) AT1G06020 167 / 3e-47 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 164 / 2e-46 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 160 / 8e-45 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 159 / 2e-44 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 158 / 4e-44 STH pfkB-like carbohydrate kinase family protein (.1) AT1G66430 159 / 7e-44 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 154 / 1e-42 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 54 / 2e-08 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097300 [exp] 319 / 1e-102 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.012G132700 [exp] 174 / 5e-50 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 166 / 5e-47 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 163 / 6e-46 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 162 / 2e-45 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 159 / 1e-44 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 160 / 2e-44 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 146 / 3e-39 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G042700 [exp] 43 / 0.0005 AT1G06730 546 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017191 [exp] 614 / 0 AT3G54090 679 / 0.0 fructokinase-like 1 (.1) Lus10021118 [exp] 610 / 0 AT3G54090 676 / 0.0 fructokinase-like 1 (.1) Lus10037064 [exp] 311 / 3e-100 AT1G69200 592 / 0.0 fructokinase-like 2 (.1) Lus10036920 [exp] 294 / 3e-94 AT1G69200 582 / 0.0 fructokinase-like 2 (.1) Lus10040562 [exp] 166 / 3e-47 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 163 / 7e-46 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 162 / 1e-45 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 157 / 3e-44 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 156 / 3e-43 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 155 / 1e-42 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.016G109600.1 pacid=42810368 polypeptide=Potri.016G109600.1.p locus=Potri.016G109600 ID=Potri.016G109600.1.v4.1 annot-version=v4.1 ATGGCTTGTTTTCTTCTACTTCCACACTACAATCCCTCAACCCCACAATTTCCAAAACCTAAACCACCACCTTTTTTTCATAATAGTGCTAAGTACCCTC CATTAATCAAGCTAAACCCACCAAAAGCGTCTGCCACAAATGGGGCTGTTGACGCCCCAACTCCTTCCCGCCGTGGCCGGAAAAAGAAACCCACTACAGC TCCCACTACTGATACAGCAACTAAGAGGACCACCACCAAACGTTCAAAGAAAACTGAAGCTGAAAATGGGAGTGTTAGTGATACGGAACTGTTGGACGGT GAAGATTATGATGATGGGATTGATTTTCCTTACGAGTATCCGCCGTTGGTTTGCTGTTTTGGTGCGGTGCAGAAGGAATTTGTACCTACGGTGAGGGTAC ACGATAATCCTATGCACCAGGATATGTATTCGCAGTGGAAGATGTTGCAATGGGACCCACCTGAGTTTGCGAGGGCTCCAGGTGGGCCAGTGTCCAATGT GGCAATAGCGCATGCGAGGCTTGGTGGGAGGGCGGCGGTTATTGGGAAAGTTGGGGATGATGAGTTGGGAGAGGAGTTGGTGTTGATGATGAATAAGGAG AGAGTGCAGACGCGGGCGGTGAAGTTTGATGAGAACGTGAAAACGGCGTGTAGTTTTATGAAGGTTAAGTTTGGTGATGATGGGAAAATGAGGATGGAGA TGGTTAAGGAGGCTGCTGAGGATTCATTGCTTAGCTCTGAATTGAACCTCTCTGTGCTTAAAGAGGCGAGGATGTTCCATTTCAATTCAGAAGCCCTAAC ATCACCTTCCCTGCAATCGACACTTTTTGAAGCAATTAGACTTTCTAAGAAGTCTGGAGGGCTTATATTTTATGATTTGAATTTGCCACTGCCTTTGTGG AAATCACGCAACGAGACAAGGGAAGTTATCAAGAAAGCAATGAAGGAAGCGGATTTTATTGAGGTTTCACGAACAGAGCTGGAATTTCTCTTGGATGAAG AGTGTTATGAGAGGAAAAGGAATTGCAGCCCACAATACTATGCTGAAAGTTATGAGCAAACCAAGAATTGGCGAGACTGTTATCATTACACTCGTGAGGA AATCGCTCCGTTGTGGCATGATGGACTTAAGTTTTTGTTTGTGACTGATGGAACACTTGAGATTCATTATTATGGCCCTAAGTTTGATGGTAAAGTGACT GGAACCGAAGATGTGCTAATAACCCCATTCACTTGTGATAGGACTGGATCTGGTGATGCTATTGTGGCTGCTCTTATGAGAAAGCTTACTACTTGCCCTG AGATGTTTGAAGATCAAGATGTTTGCGAAAGGCAGCTTCGTTTTGCAGTTGCAGCGGGAATTATATCGCAATGGACAATAGGTGCAGTAAGAGGTTTTCC AACTGAAAGTGCAACACAAAACCTGAAAGAGCAGGTTTATGTACCTTCAATGTGGTAG
AA sequence Show only first row Show all	>Potri.016G109600.1 pacid=42810368 polypeptide=Potri.016G109600.1.p locus=Potri.016G109600 ID=Potri.016G109600.1.v4.1 annot-version=v4.1 MACFLLLPHYNPSTPQFPKPKPPPFFHNSAKYPPLIKLNPPKASATNGAVDAPTPSRRGRKKKPTTAPTTDTATKRTTTKRSKKTEAENGSVSDTELLDG EDYDDGIDFPYEYPPLVCCFGAVQKEFVPTVRVHDNPMHQDMYSQWKMLQWDPPEFARAPGGPVSNVAIAHARLGGRAAVIGKVGDDELGEELVLMMNKE RVQTRAVKFDENVKTACSFMKVKFGDDGKMRMEMVKEAAEDSLLSSELNLSVLKEARMFHFNSEALTSPSLQSTLFEAIRLSKKSGGLIFYDLNLPLPLW KSRNETREVIKKAMKEADFIEVSRTELEFLLDEECYERKRNCSPQYYAESYEQTKNWRDCYHYTREEIAPLWHDGLKFLFVTDGTLEIHYYGPKFDGKVT GTEDVLITPFTCDRTGSGDAIVAALMRKLTTCPEMFEDQDVCERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYVPSMW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	0	1
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	1.00	0.9828
AT1G32580			plastid developmental protein ...		Potri.010G068300 [exp]	2.23	0.9769
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	2.44	0.9797
AT3G09250			Nuclear transport factor 2 (NT...		Potri.016G105600 [exp]	2.82	0.9772
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.006G205000 [exp]	3.00	0.9793
AT5G38290			Peptidyl-tRNA hydrolase family...		Potri.004G098100 [exp]	3.46	0.9727
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Potri.001G103300 [exp]	5.47	0.9705	Pt-PDE316.1
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	5.91	0.9755
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	6.24	0.9722
AT1G36320			unknown protein		Potri.002G091000 [exp]	6.32	0.9749

Compare expression of checked genes

Potri.016G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.