Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 741 / 0 O-fucosyltransferase family protein (.1) AT3G54100 730 / 0 O-fucosyltransferase family protein (.1) AT5G01100 635 / 0 O-fucosyltransferase family protein (.1) AT5G35570 583 / 0 O-fucosyltransferase family protein (.1) AT1G22460 428 / 4e-142 O-fucosyltransferase family protein (.1) AT1G14020 413 / 3e-137 O-fucosyltransferase family protein (.1) AT5G64600 409 / 4e-135 O-fucosyltransferase family protein (.1) AT2G03280 402 / 3e-133 O-fucosyltransferase family protein (.1.2) AT5G15740 400 / 5e-132 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 397 / 1e-130 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095300 [exp] 1070 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 595 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 434 / 6e-145 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 433 / 2e-144 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 426 / 7e-142 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 418 / 2e-139 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 413 / 2e-137 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 411 / 3e-136 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 410 / 3e-136 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035540 [exp] 796 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 795 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 789 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 777 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 576 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 574 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 570 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 570 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 423 / 2e-140 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 412 / 1e-136 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.016G109700.4 pacid=42809043 polypeptide=Potri.016G109700.4.p locus=Potri.016G109700 ID=Potri.016G109700.4.v4.1 annot-version=v4.1 ATGAATCAGAGAAGACAGTGTGCGTGTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATAATATAAATCGAAAACCAAAAAACCAGAAAAACC ATTACACACCTCTACTGTCCCTTACATTACGGCCTATCTCCCTTCCTCCCTCCCATCCCAGCCAGAAACCGCACGCGCACACGTCCAACACCACCAAAAA CAACAACAACAAAACGCAAATCTCCGATCTCTCAAACATTTTGCCACTTATGACCACCCTGTCGTCCGGTGGTCCCACCGGTAACTCCGCCAATGCCAGC CCAAGGAACCACTCGGGTCCCACTACAACTAGACGACGCGTTGATGTCGCCCCCTCCGACAGGACCTCTAACTTCTCTGATTATAATCACGAGTTCTCTG ACGAAGAAGACAATCTTAACGGCTCTTCCACTTCTGGGGGCCCCCACCTTTATTATCATTATCATAATCATAGCCACCACCACCCCGTTATAAAGTATCT TCTGCTTCGCAGGAAGTTGTTCTTTTTTGTGCCGGAGGCGTGTTTGCTTGGGGTGGAGGACTTGACGGCTACGATTTCACATAGTTTGAGATCCGGCAAG AACATGGGTCGTAAGATATTCGGTGTTTTATTGTTAATGGCGGTTTTGTCGGTTTTTCTGAAGGTTTTGTTTTGGAGTCGAATGGAGGAAAACAGTCATG AAAATAGTAATTTAGTTCTTTTCAGACATTTTAAGGATGACTGGGCGAGGGCTCAACGTTCCATCATCGACCACCACCCTTCCATTTCCACACCCCTTTT CGACAAGCTTCCTCCTCAGACTCCAAAAATTTGGATGAAACCCAATAGCGACAACTTTTACAAGTGTATAGCTCCGGCAAGAAGTCAAACAAGACCCAGG AAAACAAATGGTTACCTTCTTGTTCATGCGAATGGTGGATTGAATCAAATGAGAACAGGAATTTGTGATATGGTTGCTGCTGCAAAGTTAATGAATGCAA CTCTTGTTCTTCCTTCTCTTGATCGTGAATCGTTTTGGACGGATCCAAGCACTTTTAAAGACATTTTTGACTGGAGGCACTTTATGGAAGCATTGAAAGG TGATATTGATATAGTTGAGTATTTGCCACCCCGTTATGCAGGCAAGAAGCCCCTTGAAAGGGCACCTGTTTCGTGGTCAAAGGCTAAATACTACAGAGAG GAGATGGCTGCATTGTTGAAGAAGTACAAAGTTATAAGGTTTACCCACAGTGATTCACGGCTGGCTAATAATGGCCTTGCAGCTCACATCCAGAGGCTAA GATGCCGTGCCAATTATGAAGCACTCCGGTATTCAAAGGAGATTGTGGATCTTGGGAAGAAACTGGTTGATAGACTAGGAAATAACAGCGAGCCATATGT TGCTTTGCATTTAAGATATGAGAAAGACATGCTTGCATTCACCGGCTGCAGCCACAACCTTACCGCGGAAGAGGCTGATGAGCTAAGGGATATGAGGCAT AAAACTCCGCATTGGAAGGAGAAGGAGATTGATAGTGAAGCACGACGGCTCCAAGGTGGATGCCCGATGACTCCTAGAGAAGCAGCTATCTTTCTCAAGG CAATGGGCTATCCATCCTCAACAACTATCTATATAGTTGCAGGGCCGATATATGGAAGTGATAGCATGGCACCCTTCCTTGCAGAGTTCCCAAATGTGTT CTCTCACTCTAATCTAGCAACTGCAGAAGAATTAGAACCTTTCAAGCCGTATCAAAATCGTCTTGCTGCCTTGGATTACATTGTGGCTCTTGAAAGTGAT GTCTTTATATATACTTATGATGGAAACATGGCCAAAGCTGTTCAGGGGCATAGGAGGTTTGAAGGATTTCGAAAAACTATAAATCCAGACAAACAAAATT TTGTTGCGCTGATTGATCAATTGGACGAGGGTACCTTATCCTGGGAAGAATTCTCTTCACAGGTTCAAAGCTTACATTCAGACAGGATTGGAGCACCGTA CCGGCGGCAGGCTGGCTCATTTCCTAAGGAGGAAGAGAACTTTTATGCAAATCCTCTTCCTGGATGTGTATGCAACAGTTCCCAGGATAAATTTGTGAGC CCTAAACTCGTCCATAAAGTAAAACTAAGGACCAGCGCTGCATTGAATAGACAGGGGTTAAGCTTGAATTTGTAG
AA sequence Show only first row Show all	>Potri.016G109700.4 pacid=42809043 polypeptide=Potri.016G109700.4.p locus=Potri.016G109700 ID=Potri.016G109700.4.v4.1 annot-version=v4.1 MNQRRQCACLRERERERERERNNINRKPKNQKNHYTPLLSLTLRPISLPPSHPSQKPHAHTSNTTKNNNNKTQISDLSNILPLMTTLSSGGPTGNSANAS PRNHSGPTTTRRRVDVAPSDRTSNFSDYNHEFSDEEDNLNGSSTSGGPHLYYHYHNHSHHHPVIKYLLLRRKLFFFVPEACLLGVEDLTATISHSLRSGK NMGRKIFGVLLLMAVLSVFLKVLFWSRMEENSHENSNLVLFRHFKDDWARAQRSIIDHHPSISTPLFDKLPPQTPKIWMKPNSDNFYKCIAPARSQTRPR KTNGYLLVHANGGLNQMRTGICDMVAAAKLMNATLVLPSLDRESFWTDPSTFKDIFDWRHFMEALKGDIDIVEYLPPRYAGKKPLERAPVSWSKAKYYRE EMAALLKKYKVIRFTHSDSRLANNGLAAHIQRLRCRANYEALRYSKEIVDLGKKLVDRLGNNSEPYVALHLRYEKDMLAFTGCSHNLTAEEADELRDMRH KTPHWKEKEIDSEARRLQGGCPMTPREAAIFLKAMGYPSSTTIYIVAGPIYGSDSMAPFLAEFPNVFSHSNLATAEELEPFKPYQNRLAALDYIVALESD VFIYTYDGNMAKAVQGHRRFEGFRKTINPDKQNFVALIDQLDEGTLSWEEFSSQVQSLHSDRIGAPYRRQAGSFPKEEENFYANPLPGCVCNSSQDKFVS PKLVHKVKLRTSAALNRQGLSLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37980			O-fucosyltransferase family pr...		Potri.016G109700 [exp]	0	1
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.010G107300 [exp]	4.12	0.7558
AT4G30780			unknown protein		Potri.018G102800 [exp]	10.77	0.6440
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	23.83	0.6322
AT3G61790			Protein with RING/U-box and TR...		Potri.001G026200 [exp]	34.17	0.6179
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	37.78	0.6206
AT5G23360			GRAM domain-containing protein...		Potri.017G152900 [exp]	42.04	0.6028
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	42.76	0.5984
AT1G04560			AWPM-19-like family protein (....		Potri.010G064200 [exp]	49.11	0.6293
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	54.31	0.6052
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	54.56	0.6208

Compare expression of checked genes

Potri.016G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.