Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07380 1138 / 0 Neutral/alkaline non-lysosomal ceramidase (.1) AT2G38010 1121 / 0 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT5G58980 1039 / 0 Neutral/alkaline non-lysosomal ceramidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247400 [exp] 1228 / 0 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.009G040600 [exp] 1224 / 0 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.002G013300 [exp] 882 / 0 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005873 [exp] 1170 / 0 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021122 [exp] 1126 / 0 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10017188 [exp] 1093 / 0 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10034564 [exp] 439 / 7e-148 AT5G58980 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10001198 [exp] 429 / 2e-146 AT1G07380 384 / 4e-129 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034565 [exp] 354 / 8e-117 AT1G07380 356 / 5e-118 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021829 [exp] 133 / 2e-35 AT5G58980 125 / 2e-33 Neutral/alkaline non-lysosomal ceramidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [poplar] [flax] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal CL0159 [poplar] [flax] E-set PF17048 [poplar] [flax] Ceramidse_alk_C Neutral/alkaline non-lysosomal ceramidase, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G110000.4 pacid=42809510 polypeptide=Potri.016G110000.4.p locus=Potri.016G110000 ID=Potri.016G110000.4.v4.1 annot-version=v4.1 ATGGACATTTTTCCGAGAGGGTATAGTGGGTTATGGCTGCAAATTGCATCCGTTTGGTTCTTGGTGATGTTAATGCAGAATTTTAGAGGGAGTTTATCAA CTTCCAATTACTTGATTGGACTCGGGAGCTATGACATAACAGGGCCTGCAGCTGATGTCAACATGATGGGGTATGCAAATACGGAACAGATTGCTTCTGG TGTTCACTTCAGGTTGCGAGCTCGTGCATTCATTGTGGCTGAGCCTCAGGGGAGCCGTGTTGTCTATGTGAACCTTGATGCTTGTATGGCCTCGCAGATT GTTACTATTAAAGTTCTTGAGAGATTGAAAGCAAGGTATGGAGGGCTTTATACAGAGCAGAATGTTGCCATTAGTGGTATCCACACCCATGCCGGGCCTG GAGGCTATCTGCAATATGTTGTATATATTGTGACTTCGCTTGGGTTCGTTCGCCAGTCTTTTGATGTTCTTGTTGATGGTATTGAGAAAAGCATCATACA AGCTCATGAAAATCTTCGGCCAGGGTCAATTTTTGTAAATAAAGGAGAGCTGTTAGATGCTGGTGTAAATCGCAGTCCTAGTTCTTATCTTAATAATCCT GCAGAAGAGCGGAGTAAATATAAGTATGATGTGGATAAAGAAATGACCCTACTAAAGTTTGTGGATGATGAGTGGGGGGCAGTAGGTAGTTTTAACTGGT TTGCGACTCATGGAACTTCAATGAGTCGTACAAACTCACTGATAAGTGGTGACAACAAAGGAGCTGCTGCACGATTTATGGAGGACTGGTTTGAGAAAAA AGGCCATGTTGAAAATTTGGATAGCCAACATGCTAATAAATCTGGAACTGCAAAAATCCCTCGAAGAGTCTCAAGCATAGTTCCTAGCATCAATGAGAAC CGTAAGGAAGCGATGGAAGTTGCCGCCTCCTTCAAATCTTCTCAGGGGCAACCTGCTACAAGGTTTTCGAGTGTTGCAAAACGGGTCAGAAACTCTTTGA GGCTGGCTGACAGGCCCCAATTTGTATCTGCGTTCTGTCAAACTAATTGCGGTGATGTAAGTCCCAATGTTCTTGGTGCATTCTGCATTGACACTGGACT ACCTTGCGATTTCAATCATAGTACCTGCAACGGGAAGAATGAACAGTGCTATGGCAGGGGCCCAGGTTATCCTGATGAATTTGAGAGTACAAGAATCATT GGAGAAAGACAATTCAAAAAAGCTGTCGAATTGTTCAACAAAGCAACTGAGCAGCTGAAAGGGAAGGTTGGGTACCGACATGCTTATTTGAATTTCTCAA ATCTTGAAGTTGCACAAGGCAATGACGTGGTGAAGACATGTCCTGCAGCCATGGGCTTTGCTTTTGCTGCTGGAACCACCGATGGACCTGGAGCTTTTGA TTTCAAGCAAGGAGATGACAAGGGCAATGCCTTCTGGAGGTTGGTGAGGGACTTTCTGAAAACACCAAATCAGGAACAAGTCGATTGTCAGCGTCCAAAG CCTATTCTGCTTGACACTGGTGAAATGGACAAACCGTATGCCTGGGCACCTTCAATACTTCCAGTTCAAATCTTGCGGATAGGACAACTTGTCATTCTCA GTGTACCTGGAGAGTTCACTACCATGGCTGGCAGGCGCCTTCGCGATGCTGTGAAGATGGTTCTCACTTCAGGAGCTAGCAAAGAGTTCGGGAGAAATGT TCACGTTGTCATTTCTGGTCTGACAAATACGTATTCACAGTATGTGACAACATTTGAGGAGTATGAAGTGCAGAGATATGAGGGGGCCTCCACTCTTTAT GGCCCACACACACTCAGTGCCTACATTCAGGAGTTCAGGAAACTAGCTGCAGCTCTCATCAGTGGCCGACCTGTGGAACCAGGTCCACAACCCCCAGATC TCCTTGACGAGCAAATCAGTTTATTAACTCCAGTTGTCTTAGATTCAACCCGTTCTGGTGCAAAGTTTGGAGATGTTAAAAGCGACGTCCCTTTAAACTC CACCTTCAAAAGGGGTGACATGGTTACAGTCACATTCTGGTCTGCTTGCCCAAGGAATGACCTTCTGACCGAGGGCACATTTGCTCTAGTTGAGATTCTC CAGGGCCAGAAGACATGGGTTCCAGCATACGACGATGACGACTTCTGCCTGCGGTTTATTTGGTCACGGCCTTCAAAACTTAGTCCTCAGAGTTACGCAA CCATAGAATGGAGAATTCCGCAGTCAGCAGTCTCTGGTGTGTACAGGGTAAGGCATTTCGGTGCTGCGAAGGCACTCTTTGGTTCAATCAGCCATTTCAC AGGCTCTTCGAGTGCGTTTGTAGTAGCATGA
AA sequence Show only first row Show all	>Potri.016G110000.4 pacid=42809510 polypeptide=Potri.016G110000.4.p locus=Potri.016G110000 ID=Potri.016G110000.4.v4.1 annot-version=v4.1 MDIFPRGYSGLWLQIASVWFLVMLMQNFRGSLSTSNYLIGLGSYDITGPAADVNMMGYANTEQIASGVHFRLRARAFIVAEPQGSRVVYVNLDACMASQI VTIKVLERLKARYGGLYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVLVDGIEKSIIQAHENLRPGSIFVNKGELLDAGVNRSPSSYLNNP AEERSKYKYDVDKEMTLLKFVDDEWGAVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEKKGHVENLDSQHANKSGTAKIPRRVSSIVPSINEN RKEAMEVAASFKSSQGQPATRFSSVAKRVRNSLRLADRPQFVSAFCQTNCGDVSPNVLGAFCIDTGLPCDFNHSTCNGKNEQCYGRGPGYPDEFESTRII GERQFKKAVELFNKATEQLKGKVGYRHAYLNFSNLEVAQGNDVVKTCPAAMGFAFAAGTTDGPGAFDFKQGDDKGNAFWRLVRDFLKTPNQEQVDCQRPK PILLDTGEMDKPYAWAPSILPVQILRIGQLVILSVPGEFTTMAGRRLRDAVKMVLTSGASKEFGRNVHVVISGLTNTYSQYVTTFEEYEVQRYEGASTLY GPHTLSAYIQEFRKLAAALISGRPVEPGPQPPDLLDEQISLLTPVVLDSTRSGAKFGDVKSDVPLNSTFKRGDMVTVTFWSACPRNDLLTEGTFALVEIL QGQKTWVPAYDDDDFCLRFIWSRPSKLSPQSYATIEWRIPQSAVSGVYRVRHFGAAKALFGSISHFTGSSSAFVVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	0	1
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.004G086300 [exp]	1.00	0.7815
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	1.41	0.7501
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Potri.014G074600 [exp]	1.73	0.7309
AT3G26720			Glycosyl hydrolase family 38 p...		Potri.002G238200 [exp]	2.00	0.7289
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	3.46	0.7138	Pt-WRKY15.2
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	5.91	0.7286	GLT1.2
AT1G33055			unknown protein		Potri.001G452500 [exp]	8.94	0.6953
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.001G192300 [exp]	10.95	0.7019
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	15.19	0.7116
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	15.58	0.7008

Compare expression of checked genes

Potri.016G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.