Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UCP2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54110 483 / 6e-174 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 434 / 2e-154 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 188 / 9e-58 DIC2 dicarboxylate carrier 2 (.1) AT1G14140 186 / 6e-57 Mitochondrial substrate carrier family protein (.1) AT2G22500 178 / 7e-54 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G09470 167 / 2e-49 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 161 / 3e-47 Mitochondrial substrate carrier family protein (.1) AT5G19760 144 / 7e-41 Mitochondrial substrate carrier family protein (.1) AT5G66380 93 / 1e-21 ATFOLT1 folate transporter 1 (.1) AT5G61810 92 / 4e-21 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095500 [exp] 537 / 0 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 453 / 5e-162 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.017G045100 [exp] 202 / 5e-63 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 202 / 6e-63 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 199 / 4e-62 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 197 / 3e-61 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 181 / 8e-55 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 180 / 2e-54 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 176 / 8e-53 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027755 [exp] 499 / 4e-180 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 498 / 1e-179 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 496 / 7e-179 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 477 / 1e-171 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 427 / 2e-151 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10016445 [exp] 410 / 2e-144 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10030443 [exp] 178 / 6e-54 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 150 / 2e-43 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 150 / 9e-42 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 146 / 2e-41 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.016G110100.4 pacid=42808989 polypeptide=Potri.016G110100.4.p locus=Potri.016G110100 ID=Potri.016G110100.4.v4.1 annot-version=v4.1 ATGGTGGCCGATTCCAAAGGCAAATCCGATATCTCCTTCGCCGGAACTTTTGCCAGCAGTGCTTTTGCCGCATGTTTTGCTGAGATATGCACAATTCCAT TGGACACTGCAAAAGTTAGGCTGCAGTTACAAAAGTCGGCTGTTGCAGGAGATGGAGTGGCCTTGCCAAAATACAGGGGCATGTTGGGCACGGTTGCTAC CATTGCAAGGGAAGAAGGTTTGGCAGCGCTCTGGAAAGGAATTGTACCTGGATTGCATCGGCAATGCGTGTATGGAGGGTTACGGATTGGGTTATATGAA CCTGTGAAGAACTTGTATGTGGGCAGTGACTTTGTTGGAGATGTTCCTTTGACCAAGAAGATTCTTGCTGCACTTACTACCGGTGCCATTGGAATCGCTG TGGCAAATCCAACTGATCTTGTGAAAGTTAGACTTCAGGCTGAAGGGAAACTACCAGCCGGTGTACCAAGGCGCTATTCTGGAGCTATGAATGCATACTC CACGATTGTGAGACAGGAAGGAGTTGGGGCACTCTGGACTGGGATTGGACCCAATATAGCTAGAAATGCTATTATAAATGCTGCTGAACTGGCCAGCTAT GATCAAGTGAAGGAGACAATTTTGAAAATTCCTGGATTCACAGACAATGTTGTCACTCATCTTTTTGCTGGTATGGGGGCGGGTTTTTTCGCTGTTTGTA TCGGTTCCCCAGTTGATGTGGTCAAGTCAAGAATGATGGGGGATTCTACTTACAAAAACACACTTGACTGTTTCATCAAGACTTTGAAGAATGATGGCCC ACTTGCTTTCTACAAGGGCTTTATTCCAAATTTTGGAAGGCTGGGATCTTGGAATGTGATAATGTTTCTAACTTTAGAACAGGCTAAGAAATTTGTCAGA AGCTTGGAATCATCTCGAGCTTGA
AA sequence Show only first row Show all	>Potri.016G110100.4 pacid=42808989 polypeptide=Potri.016G110100.4.p locus=Potri.016G110100 ID=Potri.016G110100.4.v4.1 annot-version=v4.1 MVADSKGKSDISFAGTFASSAFAACFAEICTIPLDTAKVRLQLQKSAVAGDGVALPKYRGMLGTVATIAREEGLAALWKGIVPGLHRQCVYGGLRIGLYE PVKNLYVGSDFVGDVPLTKKILAALTTGAIGIAVANPTDLVKVRLQAEGKLPAGVPRRYSGAMNAYSTIVRQEGVGALWTGIGPNIARNAIINAAELASY DQVKETILKIPGFTDNVVTHLFAGMGAGFFAVCIGSPVDVVKSRMMGDSTYKNTLDCFIKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFVR SLESSRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.016G110100 [exp]	0	1	UCP2.3
AT2G22420			Peroxidase superfamily protein...		Potri.007G096200 [exp]	7.68	0.8737
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.009G108600 [exp]	9.89	0.8976
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	12.64	0.8891
AT2G37460			nodulin MtN21 /EamA-like trans...		Potri.006G082700 [exp]	15.29	0.9178
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Potri.004G140800 [exp]	30.00	0.8979	NIR1.1
AT3G05858			unknown protein		Potri.013G001900 [exp]	30.19	0.8929
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094300 [exp]	31.93	0.9004
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	32.17	0.8951
AT1G76800			Vacuolar iron transporter (VIT...		Potri.005G190800 [exp]	36.00	0.8977
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	39.11	0.8841	ATML1.2

Compare expression of checked genes

Potri.016G110100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.