Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54130 345 / 4e-120 Josephin family protein (.1) AT2G29640 60 / 5e-10 JOSL JOSEPHIN-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095700 [exp] 418 / 8e-150 AT3G54130 321 / 1e-111 Josephin family protein (.1) Potri.001G249400 [exp] 48 / 2e-06 AT2G29640 230 / 2e-75 JOSEPHIN-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027757 [exp] 405 / 2e-143 AT3G54130 333 / 4e-115 Josephin family protein (.1) Lus10035536 [exp] 402 / 2e-142 AT3G54130 323 / 4e-111 Josephin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02099 [poplar] [flax] Josephin Josephin
Representative CDS sequence Show only first row Show all	>Potri.016G110300.1 pacid=42810527 polypeptide=Potri.016G110300.1.p locus=Potri.016G110300 ID=Potri.016G110300.1.v4.1 annot-version=v4.1 ATGGAAGGAGAGAGCAATGGAGGGATGTTGTACCACGAGGTACAAGAGGCAAAGCTATGCGCCGTACATTGTGTTAACACGGTGTTACAAGGACCATTCT TTTCAGAATTCGATTTGGCGGCGCTTGCATCCGATCTCGATACGAAAGAGCGCCAAATGATGCAAGAGGGCACCGTCTCCGCCGCTGCTTCTGGTGATTT TCTCTCCGCCGAGTCTCATAATGTCTCCTTAGGCGGTGATTTCAGTATCCAGGTTTTACAAAAGGCTTTAGAGGTGTGGGACTTGCAGGTCATTGCCTCT GATAGTCCGGTTGCTGAGCATGCACAGATTGACCCTGATCTAGAAAATGCATTTATTTGTCATTTGCATGATCATTGGTTCTGCATTAGGAAAGTGAATG GGGAGTGGTATAACTTTGACAGCCTCTACGCAGCTCCACAACACTTATCCAAGTTTTACCTTGCAGCCTATCTGGATTCTCTTAAAAACTCTGGCTGGAG CATTTTCCTGGTGAGAGGAAACTTCCCGAAAGAGTTTCCCATTGCTTCCTCTGAAGCTTCCAATGGTTATGGGCAGTGGCTGTCTCCTGAAGATGCTGAG AGGATTATTAAATCCTGCAACAACACGCAGTCTCCTCAGAGAATCAATTCCACTCAACAGGATTCTAATCCATATCAAGAAATTCTGTTAGAAATGGAGG ACCAGGACATGAAAGCTGCAATAGCTGCCAGCTTGATGGAACCTTCCCAATCCATGAGCAGGGTGGAAACTGGCAGTCCCCAAAAAGACGATGAAGATAC CAAAGATGACAACAAAGATAGCGAGGACAAAAAGCCTCAATAA
AA sequence Show only first row Show all	>Potri.016G110300.1 pacid=42810527 polypeptide=Potri.016G110300.1.p locus=Potri.016G110300 ID=Potri.016G110300.1.v4.1 annot-version=v4.1 MEGESNGGMLYHEVQEAKLCAVHCVNTVLQGPFFSEFDLAALASDLDTKERQMMQEGTVSAAASGDFLSAESHNVSLGGDFSIQVLQKALEVWDLQVIAS DSPVAEHAQIDPDLENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKNSGWSIFLVRGNFPKEFPIASSEASNGYGQWLSPEDAE RIIKSCNNTQSPQRINSTQQDSNPYQEILLEMEDQDMKAAIAASLMEPSQSMSRVETGSPQKDDEDTKDDNKDSEDKKPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54130			Josephin family protein (.1)		Potri.016G110300 [exp]	0	1
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	1.41	0.8249
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	4.24	0.7783
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	5.65	0.7643
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	6.00	0.7722
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	7.48	0.7376
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Potri.001G061000 [exp]	8.12	0.7461
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	11.22	0.7431	RAB11.4
AT5G17280			unknown protein		Potri.007G017200 [exp]	11.83	0.7083
AT1G76860			Small nuclear ribonucleoprotei...		Potri.005G191600 [exp]	12.00	0.7369
AT5G46020			unknown protein		Potri.011G060800 [exp]	13.26	0.7325

Compare expression of checked genes

Potri.016G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.