Plant FIBer expression Database

Pt-CAC3.2 (Potri.016G110500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-CAC3.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38040 890 / 0 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G095800
[exp]
1224 / 0 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Potri.014G081000
[exp]
644 / 0 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021126
[exp]
723 / 0 AT2G38040 765 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Lus10017184
[exp]
662 / 0 AT2G38040 755 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF01039 Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence
>Potri.016G110500.1 pacid=42810224 polypeptide=Potri.016G110500.1.p locus=Potri.016G110500 ID=Potri.016G110500.1.v4.1 annot-version=v4.1
ATGGCTTCTTCTTTATCGAATTCGGCAGTTGCATTTACCGGAGCGACAGCTTCGGATCTTCTGCGGAGCTCGAAGAGCTGTGGTGTTAGTGGCATTTCGT
TGAGAACCCTAGGAAAGGCGCGATTCAGTGTGAAAACGAGGGATTTATCGGTGGTTGCGAAGGCTAGGAAAGTTAAGAAGCATGAATATCCATGGCCTGC
GGATCCGGATCCGAATGTGAAAGGCGGGGTTTTAACTCATTTATCGCATTTTAAGCCTCATAAAGAGAAGCCTAAACCGGTTACTTTGGATTTCGAGAAA
CCACTTGTTGCACTCGAAAAGAAGATCATCGATGTGCGGAAGATGGCGAATGAAACTGGTTTGGACTTCAGCGATCAGATTGCATCGTTAGAGAGTAAAT
ATCAACAGGCTCTAAAGGATTTGTATACGCATCTGACTCCTATACAACGTGTGAATATTGCACGCCATCCAAACAGGCCAACATTCCTTGATCACATATT
TGGCATTACTGAAAAGTTTGTAGAGCTTCATGGAGATCGTGCAGGATATGATGATCCTGCTATTGTTACTGGTATAGGCACAATAGATGGTAGAAGATAC
ATGTTCATGGGTCACCAAAAGGGAAGAAACACAAAAGAGAACATTATGCGTAACTTTGGGATGCCTACTCCTCATGGCTATCGGAAGGCTTTACGCATGA
TGTATTATGCAGATCACCATGGCTTCCCTATTGTTACCTTTATCGATACACCTGGAGCATATGCAGATCTTAAATCCGAGGAACTAGGCCAAGGCGAAGC
CATTGCTCATAATTTGAGGACCATGTTTGGCCTAAAGGTTCCCATTGTTTCTATTGTTATTGGGGAAGGTGGCTCTGGTGGTGCTCTGGCCATTGGCTGT
GCTAATAAATTGTTAATGCTTGAAAACGCAGTTTTCTATGTGGCCAGTCCTGAAGCATGTGCAGCAATTTTATGGAAGACTGCCAAAGCTGCTCCAAAGG
CAGCTGAGAAGCTTAAAATCACTGGTCCCGAGTTGTGTAAGCTGCAAATTGCAGATGGAATCATACCTGAGCCACTAGGTGGAGCACATGCAGATCCATC
ATGGACCTCACAACAGATAAAGAAAGCAATTAATGAAACTATGGATGAGCTCAAGAAAATGGACACAGAAGCTTTACTAAAACATCGCATGCTTAAGTTT
CGAAAAATCGGTGGGTTTCAGGAAGGAGTCCCAGTTGATCCTATAAGAAAAGTCAACATGAAGAAGAAAGAAGAACCCATTGCGAGAAAGACTCCAGTTC
TGGAATTGGAGGATGAGGTTGAAAAACTGAAAGAGCAAATTTCAAAGGCCAAGGAGTCATCTAGCAAGCCTACAGAGTTGGCTTTAAATGAGATGATAGA
GAAACTAAAAAAGGAGATTGATCTTGAATATTCTGAAGCTGTTGAAGCGATTGGCTTAAAGGACAGGTTATTGAATTTGCGGGAAGAATGTGCAAAAGCA
AATTCACAGGACCATCTCATGCATCCAGTTCTGATGGACAAGATCGAAAAGCTTCATGATGAATTTAACAAGGGCCTGCCAACTGCTCCTAATTATGCGA
ACCTGAAGTACAAGCTTGGCATGTTGAAGGAGTTTTCTGAAGCCAAATGCGCCTTGGAGAAGAAGAGCAAGGGTGAGGAGCTGAAACTGGATATCGATAA
GAAAATCAAAGAGGTCATGGATCGGCCTGAAATTAAGGAGAAGATGCAAGCACTAAAGGCAGAAGTTCAAAAGTCAGGGGCTTCTACTGCTGCAGATTTA
GATGAAGGCACAAGGGAGAGCATATCAAAGATGAAGAAAGAGATACAGTTGGAATTGGCGAATGTCCTCAAGTCCATGGATTTGGATGTTGAGATTGTAA
CGGCAAAGAAACTCATTGATGATGGCTTGAAGGGAAAGGTAGAAAGTTTGAGGGAGGAAACTAACAAGAAAATTGAAAATCTGATGAACTCATCAGATCT
TAAAAACACTATCCAGTTACTGAAGTTGGAGGTAGCCAAGGCAGGGAAAACACCTGATGTCGCATCAAAAAAAAAAATTGAGGCTTTAGAACAACAAATA
AGGCAGAAGCTTGCCACTGCTATGAACTCCTCAGAAATAAAATCGAAGCATGAAGAGCTGCTGGCAGAGATCGCCCTAGAATCCAATGGAAGTTTGAAAA
ATGATGATCTAAAGGAAGGGACTCCAAAAAATGATGAATCCAGGGTAGAAATTAATTTGGGTGCAAATCGCAGCTTTACTTAG
AA sequence
>Potri.016G110500.1 pacid=42810224 polypeptide=Potri.016G110500.1.p locus=Potri.016G110500 ID=Potri.016G110500.1.v4.1 annot-version=v4.1
MASSLSNSAVAFTGATASDLLRSSKSCGVSGISLRTLGKARFSVKTRDLSVVAKARKVKKHEYPWPADPDPNVKGGVLTHLSHFKPHKEKPKPVTLDFEK
PLVALEKKIIDVRKMANETGLDFSDQIASLESKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHIFGITEKFVELHGDRAGYDDPAIVTGIGTIDGRRY
MFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGC
ANKLLMLENAVFYVASPEACAAILWKTAKAAPKAAEKLKITGPELCKLQIADGIIPEPLGGAHADPSWTSQQIKKAINETMDELKKMDTEALLKHRMLKF
RKIGGFQEGVPVDPIRKVNMKKKEEPIARKTPVLELEDEVEKLKEQISKAKESSSKPTELALNEMIEKLKKEIDLEYSEAVEAIGLKDRLLNLREECAKA
NSQDHLMHPVLMDKIEKLHDEFNKGLPTAPNYANLKYKLGMLKEFSEAKCALEKKSKGEELKLDIDKKIKEVMDRPEIKEKMQALKAEVQKSGASTAADL
DEGTRESISKMKKEIQLELANVLKSMDLDVEIVTAKKLIDDGLKGKVESLREETNKKIENLMNSSDLKNTIQLLKLEVAKAGKTPDVASKKKIEALEQQI
RQKLATAMNSSEIKSKHEELLAEIALESNGSLKNDDLKEGTPKNDESRVEINLGANRSFT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Potri.016G110500
[exp]
0 1 Pt-CAC3.2
AT3G51950 C3HZnF Zinc finger (CCCH-type) family... Potri.001G255532
[exp]
2.82 0.7597
AT1G15030 Protein of unknown function (D... Potri.013G149400
[exp]
16.85 0.7547
AT1G43710 EMB1075 embryo defective 1075, Pyridox... Potri.005G190500
[exp]
20.00 0.7396
AT3G24550 ATPERK1 proline-rich extensin-like rec... Potri.006G242800
[exp]
22.24 0.7433
AT1G71860 ATPTP1, PTP1 protein tyrosine phosphatase 1... Potri.013G115400
[exp]
38.49 0.6737 PTP1.1
AT1G75800 Pathogenesis-related thaumatin... Potri.005G240900
[exp]
44.36 0.7064
AT2G41790 Insulinase (Peptidase family M... Potri.006G050700
[exp]
44.89 0.7334
AT3G26618 ERF1-3 eukaryotic release factor 1-3 ... Potri.014G141000
[exp]
56.78 0.7401
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Potri.006G095800
[exp]
60.33 0.6844 CAC3.1
AT5G16390 CAC1-A, BCCP-1,... BIOTIN CARBOXYL-CARRIER PROTEI... Potri.017G092500
[exp]
72.16 0.7146

Potri.016G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.