Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DET2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38050 349 / 2e-122 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 77 / 2e-16 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 71 / 7e-14 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 60 / 2e-10 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT3G55360 54 / 3e-08 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G43840 39 / 0.0004 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134433 [exp] 378 / 7e-134 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 374 / 3e-132 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 79 / 4e-17 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 76 / 4e-16 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 75 / 9e-16 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 73 / 5e-15 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.009G125200 [exp] 73 / 9e-15 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.010G245332 [exp] 71 / 2e-14 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.004G163600 [exp] 69 / 2e-13 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021127 [exp] 267 / 4e-91 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 153 / 5e-46 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 72 / 3e-14 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 66 / 4e-13 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10042055 [exp] 67 / 1e-12 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10028371 [exp] 63 / 3e-11 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10005162 [exp] 58 / 1e-09 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10001695 [exp] 56 / 7e-09 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10041820 [exp] 0 / 1 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF06966 [poplar] [flax] DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence Show only first row Show all	>Potri.016G110600.1 pacid=42809290 polypeptide=Potri.016G110600.1.p locus=Potri.016G110600 ID=Potri.016G110600.1.v4.1 annot-version=v4.1 ATGGCCCTATTAGATCAGAGCCTCTTTCACTACAGTCTCCTATCCATTTACCTCATAGGACCCCCTACATTCATTTCCCTGAAATTTCTTCAAGCCCCGT ATGGGAAGCACCACCGTCCAGGGTGGGGTCCTACAATCTCTCCACCCTTGGCTTGGATCCTCATGGAAAGCCCCACTCTTTGGCTCACACTCCTCCTCTT CCCCTATGGCCAACACTTCACCAATCCCAAAGCTCTCATTCTCATGTCCCCCTTCCTCCTCCACTACTTCCACCGCACCTGCATCTACCCACTTCGGATT TATCGGAATTCCAAAACCACTGGTGGTTTCCCGGTGAGTGTGGCCGTTATGGCATTTGGGTTTAATCTGCTGAATGCTTACCTGCAGGCTAGGTGGGTGT CTCATTACAAGAGTGATTATGACGGGGGACTGTTTTGGTGGAAGTTTTTTGGTGGGTTAGTGGTGTTTGTGTGGGGCATGAGGATCAATACGTGGGCCGA TGGGGTTTTGTTAGGTTTGAAGAGGGAAGGTGGTGGGTATAAGGTGCCGAGAGGAGGGTGGTTTGAGTTGGTGAGCTGCCCCAACTACTTCGGGGAGATT GTGGAGTGGCTTGGATGGGCAGTGATGACTTGGTCTTGGGCTGGGTTTGGTTTTTTACTCTATACATGTGCTAACTTGGTGCCTAGGGCATGTGCCAATC ACAAATGGTACCTGGAGAAGTTCAAAGAGGATTATCCCAGGAGCAGGAAAGCAGTGATCCCTTTTCTGTGTTGA
AA sequence Show only first row Show all	>Potri.016G110600.1 pacid=42809290 polypeptide=Potri.016G110600.1.p locus=Potri.016G110600 ID=Potri.016G110600.1.v4.1 annot-version=v4.1 MALLDQSLFHYSLLSIYLIGPPTFISLKFLQAPYGKHHRPGWGPTISPPLAWILMESPTLWLTLLLFPYGQHFTNPKALILMSPFLLHYFHRTCIYPLRI YRNSKTTGGFPVSVAVMAFGFNLLNAYLQARWVSHYKSDYDGGLFWWKFFGGLVVFVWGMRINTWADGVLLGLKREGGGYKVPRGGWFELVSCPNYFGEI VEWLGWAVMTWSWAGFGFLLYTCANLVPRACANHKWYLEKFKEDYPRSRKAVIPFLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.016G110600 [exp]	0	1	Pt-DET2.1
AT1G43130		LCV2	like COV 2 (.1)		Potri.005G148000 [exp]	4.79	0.8245
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.010G236700 [exp]	10.39	0.8164
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	11.74	0.7852
AT2G46170			Reticulon family protein (.1.2...		Potri.014G091200 [exp]	21.16	0.7841
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	21.56	0.7869
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Potri.009G100700 [exp]	23.23	0.7774	ATHM3.1,PtrTrxm5
AT4G32930			unknown protein		Potri.006G233500 [exp]	25.45	0.7182
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.002G021800 [exp]	25.51	0.8089
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	28.91	0.7760	Pt-SERK2.2
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	30.33	0.7799

Compare expression of checked genes

Potri.016G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.