Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09100 915 / 0 mRNA capping enzyme family protein (.1.2) AT5G01290 843 / 0 mRNA capping enzyme family protein (.1) AT5G28210 652 / 0 mRNA capping enzyme family protein (.1) AT5G23720 47 / 6e-05 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G23610 41 / 0.0009 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G096000 [exp] 1169 / 0 AT3G09100 948 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.014G160500 [exp] 44 / 0.0003 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027759 [exp] 869 / 0 AT3G09100 795 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10035534 [exp] 840 / 0 AT3G09100 770 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10040496 [exp] 300 / 6e-95 AT5G28210 261 / 1e-82 mRNA capping enzyme family protein (.1) Lus10034033 [exp] 45 / 1e-05 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10002263 [exp] 44 / 0.0004 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10021940 [exp] 42 / 0.0004 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain CL0078 [poplar] [flax] DNA_ligase PF01331 [poplar] [flax] mRNA_cap_enzyme mRNA capping enzyme, catalytic domain CL0021 [poplar] [flax] OB PF03919 [poplar] [flax] mRNA_cap_C mRNA capping enzyme, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G110700.2 pacid=42810607 polypeptide=Potri.016G110700.2.p locus=Potri.016G110700 ID=Potri.016G110700.2.v4.1 annot-version=v4.1 ATGGTTGTTACCATGGATTTAAATGTTTTGCCGGGGCCTGAAGATAACGAAGACAATTTTGAAGGGAACATAGAAGAACACGGCGCTCCCGAAGAACGGT TTGAGTCTGCTGCTGAAATTGCCCGCCGGGAGCGTGAAGAAAGACGCAAACGTATGAGAAATGAAAATTTGGAAGACAGACCTGCGCATGTGTCTCGGCA ACCAGTGCATGATCAACTTTTCCCATCCAAACACTATAAATCTTATGACAAAAGTAAACTTCCTGCTGGCTGGTTGGACTGTCCTGCATTTGGCCAGGAG ATAAATTGTATCGTTCCTTCCAAGGTTCCACTTGGCGAAGCCTACAATGACTGTATTCCTCCTGGTAAAAGATACTCTTTTAAACAAGTCATTCATCAAC AAAGAGTTTTAGGAAGGAAACTCGGTCTGGTGATTGATTTGACAAATACTACCCGCTACTATTCAACAACAGATTTGAAGAAAGAGGGTATCAAGCATGT CAAGATATATTGCAAGGGGCGTGATGCTGTACCAGAGAATACAGCTGTAAATACCTTTGTTTATGAGGTCATGCAATTTCTCTTGCGTCAGAAACATACA AAGAAGTATATTCTTGTCCATTGTACACATGGGCATAATCGCACAGGATATATGATAGTTCATTATCTAATGCGTTCTCAACCAATGTCTGTCACTCAAG CAATAAAAATATTTGCTGAAGCACGTCCTCCAGGAATATATAAACCAGATTATATTGATGCCTTGTACTCCTTCTATCATGAAAGAAAGCCAGAAATGGC TGTTTGCCCACCAACTCCAGAATGGAAGAGGTCTTCTGAATTTGATCTCAATGGCGAGGCAGTGCCTGATGATGATGATGATGGAGGTTCAGCTAAGAAC CTGCATGACAATCATGAGATGGATGTTGTAATGACAAATGATGATGTTCTGGGGGATGAAATACCTAATGACCAGCTCGATGCACTGCGGCAGTTCTGCT GCCAAACACTTAAGCTGAATGTTCCTGGAAGAGGAAAACCGATATTCCCTGGGTCACACCCTGTTTCTCTCAGCAGGGACAACTTACTGCTGCTGAGGAC GCGTTATTATTATGCAACATGGAAGGCTGATGGAACAAGATACATGATGTTAATTACGGTGGATGGGTGTTTTTTGATAGATAGGGATTTTAAATTCCGA AGGGTACAGATGAGGTTTCCTTGCAGATACACCAATGAAGGTCCAGCTGATAAGACACACCACTTTACGTTACTTGATGGGGAGATGATTATTGATACTT TGCCGGACTCGCAGAAGCAGGAGAGAAGATACCTTATCTATGATATGATGGCGATCAACCGAGAGTCTGTCACAGAGCGGCCCTTTCATGAACGATGGAA GATGCTTGAAAAAGAAGTGATCGAGCCCCGGAATTATGAACGCCATAACATTTACCAGAGTCGAAATCCATATTATAGATATGACCTGGAACCTTTCAGG GTGAGAAGAAAGGATTTCTGGCTGCTTTCTACTGTTACCAAGCTCCTAAAGGAATTTATTCCAAAGCTTTCACATGATGCAGATGGTCTTATTTTTCAGG GTTGGGATGATCCTTATGTTCCTCGCACTCATGAAGGCCTTTTGAAGTGGAAATATCCTGAAATGAACTCAGTTGACTTTCGATTTGAGGTTGATGATGA TGATCGTCAGTTACTTTATCTGAATGAACGAGGGACAAAGAAACTGATGGAAGGCCACAGAGTTGCATTCAAAGATGATTTAGATCCCTCTTCATACTCA GGGAAGATAATTGAGTGTTCTTGGGCCTCAGAGGAACATGTATGGGTCTGTATGCGGGTGCGGACTGATAAATCAACACCCAACGAGTTCAATACCTACA AGAAGGTGATGCGAAGCATCAAGGATAATATAACAGAGGATGTGTTGTTGAATGAGATTTACGAGATCATTCGCCTGCCCATGTATGCTGATAGGATCAG GATTGAGAGTAAAGCTCAGCAGCATGCAAATGCATCTCGGCGTAGGTGA
AA sequence Show only first row Show all	>Potri.016G110700.2 pacid=42810607 polypeptide=Potri.016G110700.2.p locus=Potri.016G110700 ID=Potri.016G110700.2.v4.1 annot-version=v4.1 MVVTMDLNVLPGPEDNEDNFEGNIEEHGAPEERFESAAEIARREREERRKRMRNENLEDRPAHVSRQPVHDQLFPSKHYKSYDKSKLPAGWLDCPAFGQE INCIVPSKVPLGEAYNDCIPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYSTTDLKKEGIKHVKIYCKGRDAVPENTAVNTFVYEVMQFLLRQKHT KKYILVHCTHGHNRTGYMIVHYLMRSQPMSVTQAIKIFAEARPPGIYKPDYIDALYSFYHERKPEMAVCPPTPEWKRSSEFDLNGEAVPDDDDDGGSAKN LHDNHEMDVVMTNDDVLGDEIPNDQLDALRQFCCQTLKLNVPGRGKPIFPGSHPVSLSRDNLLLLRTRYYYATWKADGTRYMMLITVDGCFLIDRDFKFR RVQMRFPCRYTNEGPADKTHHFTLLDGEMIIDTLPDSQKQERRYLIYDMMAINRESVTERPFHERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFR VRRKDFWLLSTVTKLLKEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFRFEVDDDDRQLLYLNERGTKKLMEGHRVAFKDDLDPSSYS GKIIECSWASEEHVWVCMRVRTDKSTPNEFNTYKKVMRSIKDNITEDVLLNEIYEIIRLPMYADRIRIESKAQQHANASRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09100			mRNA capping enzyme family pro...		Potri.016G110700 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Potri.017G001300 [exp]	17.00	0.7464
AT1G16000			unknown protein		Potri.004G051201 [exp]	30.98	0.8129
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036700 [exp]	55.69	0.8034
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	79.06	0.7675
AT4G31860			Protein phosphatase 2C family ...		Potri.006G265100 [exp]	86.29	0.7799
AT5G36930			Disease resistance protein (TI...		Potri.011G011600 [exp]	155.26	0.7778
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.004G031700 [exp]	176.16	0.7701	PtrcCXXS1
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	195.94	0.7519
AT5G36930			Disease resistance protein (TI...		Potri.006G283500 [exp]	231.10	0.7515

Compare expression of checked genes

Potri.016G110700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.