Plant FIBer expression Database

Potri.016G110800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09090 1166 / 0 DEX1 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G096100
[exp]
1421 / 0 AT3G09090 1226 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035533
[exp]
1051 / 0 AT3G09090 1164 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Lus10027760
[exp]
1050 / 0 AT3G09090 1160 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF13517 VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Representative CDS sequence
>Potri.016G110800.1 pacid=42810666 polypeptide=Potri.016G110800.1.p locus=Potri.016G110800 ID=Potri.016G110800.1.v4.1 annot-version=v4.1
ATGAAACCTCCAGCGATTAGAGTTTTCTTGATCTGTTTCTTATTATTCACCACTTCCATTCATGGAGATGAGTCCAAAAAGAACAAATTTCGAGACCGAG
AAGCCACGGACGATGCCCTTGGTTACCCTGACATAGATGAGAACGCGTTGTTGAATACACAGTGCCCTAAAAATCTAGAGCTGAGATGGCAAACCGAAGT
GAGTTCTAGCGTTTACGCTACTCCATTGATTGCCGATATCAATAGTGACGGAAAACTTGATGTAGTGGTTCCTTCTTTTGTTCACTATCTTGAAGCTCTA
GAAGGTTCTGATGGAGACAAAATCCCAGGTTGGCCTGCATTCCACCAGTCAACGGTGCATGCAAGTCCTCTCCTATATGATATTGACAAGGATGGTGTGA
GGGAGATTGCTTTGGCTACTTACAATGGTGAAGTTCTCTTCTTCAGGGTTTCAGGATACATGATGACTGATAAACTGGAAGTGCCTCGTAGGAGAGTTAA
AAAGAATTGGTATGTGGGTCTGGATCCAGATCCCGTGGATCGTTCTCACCCAGATGTTCATGATGACCAACTTGTCTTAGAGGCTACTGAGAACAAATCA
CAGTCTCACACAACTGGAAATACACATCAAAATACACCTGAAACAAATTCTTCGATTTCTACATCAACAGAAAATAGTCATCCAGCAAATGCATCCATTG
AGACTGGAAAGAAAATGAGCGAGAATCAAACGAAAACAATGATCAAACTGTCCTCGCAAGTCGATAATTCTTCTGTAGGTGCTGGGTCAAATGGAACAGA
TAATGCTCAGAATGGAACCAATAAAACTCAGAATGGAACCATTACAGTAGAGAAGGAAACCAATAATGCAGAGAATGGAACAAACACTGGAAGAAGGCTT
CTCGAAGATGACAATTCAAAGGGCTCACATGAAGGTGGCTCAGAATCTAAAGAGAATGACCATGAAAATGTTCATGCGGCAACTGTTGAAAATGATGAAG
GGTTAGAAGCAGATGCAGATTCATCTTTTGAGCTATTCCGTGAAAGTGATGAATTAGCCGATGAGTACAGTTATGACTATGATGATTATGTTGATGAATC
CATGTGGGGAGATGAAGAATGGAAAGAAAGGAAGCATGAGAGATTAGAGGATTATGTGAATATTGACTCGCATATCTTGTGCCCTCCTGTGATTGCTGAT
ATTGATAATGATGGAGTAACTGAAATGATTGTTGCAGTTTCGTATTTCTTTGATCATGAGTATTATGACAATCCTGAGCATTTGAAAGAGCTTGGTGATA
TTGATGTTGGGAAATATGTTGCCAGTTCTGTTGTTGTATTCAACCTTGATACAAAGCAAGTTAAGTGGACTCGAGAACTAGATTTAAGTACAAGTACTGC
AAAGTTTCGTGCATATATATACTCTTCGCCTTCGGTGGTTGATTTGGATGGTGATGGGAACTTGGACATTCTTGTTGGGACTTCATTTGGCTTGTTCTAT
GTCCTGGATCATCATGGAAATATTAGGGAAAATTTCCCTCTGGAAATGGCTGAAATTCAAGGTGCTGTAGTTGCAGCTGATATCAATGATGATGGAAAAA
CTGAACTAGTGACCACTGATGTACATGGAAATGTTGCTGCATGGACATCACAAGGAAAAGAAATTTGGGAAAAGCACCTTAAGAGTCTTGTTTCCCAGGG
TCCAACTATAGGCGATGTTGATGGGGATGGCCATACTGATGTTGTAGTCCCTACACTATCAGGTAACATATATGTTCTTAGTGGCAAGGATGGTTCTATT
GTTCGGCCTTACCCATACAGAACTCATGGGAGAGTGATGAATCAAGTTCTTCTTCTTGACTTAAGTAAACGTGGGGAGAAAAACAAGGGACTCACACTTG
TTACAACATCATTCGATGGTTATCTTTACCTTATAGATGGACCAACTTCTTGTGCTGATGTTGTTGATATTGGTGAAACTTCATATAGCATGGTCTTGGC
AGACAATGTTGATGGTGGAGATGATCTTGATCTCATAGTTTCAACAATGAATGGAAATGTCTTTTGCTTTTCAACTCCTGTTCCACATCATCCCCTGAAG
GCTTGGAGATCTAATAATCAAGAAAGAAACAATGTAGCAAACCGCTACAACCGTGAAGGGGTGTATATTAAACCTTCATCAAGAAGTTTCCGTGATGAGG
AGGGGAAGAGCTTCTGGGTGGAATTTGAGATTGTGGACAAGTATAGAATCCCGTCTGGGTCTCAAGCACCTTATAATGTCACTACAACCCTGTTAGTTCC
TGGCAATTATCAAGGTGAACGACGGATAAAGCAAAATCAAATCTTTGACCGTCCAGGAAAATATCGGATAAAACTTCCAACAGTTGGAGTGAGAACTACT
GGAACTGTTTTGGTGGAGATGGTTGATAAGAATGGACTCTATTTCTCAGATGACTTCTCGCTTACATTCCACATGCATTACTATAAACTGCTGAAGTGGC
TCCTTGTCCTCCCAATGCTTGGAATGTTTGGTGTGCTTGTCATCCTTCGTCCACAAGAGGCCGTGCCCTTGCCATCATTTTCAAGGAATACTGACTTGTG
A
AA sequence
>Potri.016G110800.1 pacid=42810666 polypeptide=Potri.016G110800.1.p locus=Potri.016G110800 ID=Potri.016G110800.1.v4.1 annot-version=v4.1
MKPPAIRVFLICFLLFTTSIHGDESKKNKFRDREATDDALGYPDIDENALLNTQCPKNLELRWQTEVSSSVYATPLIADINSDGKLDVVVPSFVHYLEAL
EGSDGDKIPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEVPRRRVKKNWYVGLDPDPVDRSHPDVHDDQLVLEATENKS
QSHTTGNTHQNTPETNSSISTSTENSHPANASIETGKKMSENQTKTMIKLSSQVDNSSVGAGSNGTDNAQNGTNKTQNGTITVEKETNNAENGTNTGRRL
LEDDNSKGSHEGGSESKENDHENVHAATVENDEGLEADADSSFELFRESDELADEYSYDYDDYVDESMWGDEEWKERKHERLEDYVNIDSHILCPPVIAD
IDNDGVTEMIVAVSYFFDHEYYDNPEHLKELGDIDVGKYVASSVVVFNLDTKQVKWTRELDLSTSTAKFRAYIYSSPSVVDLDGDGNLDILVGTSFGLFY
VLDHHGNIRENFPLEMAEIQGAVVAADINDDGKTELVTTDVHGNVAAWTSQGKEIWEKHLKSLVSQGPTIGDVDGDGHTDVVVPTLSGNIYVLSGKDGSI
VRPYPYRTHGRVMNQVLLLDLSKRGEKNKGLTLVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPVPHHPLK
AWRSNNQERNNVANRYNREGVYIKPSSRSFRDEEGKSFWVEFEIVDKYRIPSGSQAPYNVTTTLLVPGNYQGERRIKQNQIFDRPGKYRIKLPTVGVRTT
GTVLVEMVDKNGLYFSDDFSLTFHMHYYKLLKWLLVLPMLGMFGVLVILRPQEAVPLPSFSRNTDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09090 DEX1 DEFECTIVE IN EXINE FORMATION 1... Potri.016G110800
[exp]
0 1
AT1G04010 ATPSAT1 phospholipid sterol acyl trans... Potri.014G195500
[exp]
6.92 0.6924
AT2G45910 U-box domain-containing protei... Potri.002G160200
[exp]
15.00 0.6281
AT5G26160 unknown protein Potri.006G224200
[exp]
16.67 0.6688
AT4G22990 Major Facilitator Superfamily ... Potri.001G111400
[exp]
29.24 0.5742
AT5G14120 Major facilitator superfamily ... Potri.012G098900
[exp]
88.93 0.5227
AT4G10710 SPT16 global transcription factor C ... Potri.013G004600
[exp]
121.88 0.4899 GTC904
AT1G61690 phosphoinositide binding (.1) Potri.011G032200
[exp]
150.13 0.4751
AT5G42140 Regulator of chromosome conden... Potri.005G190000
[exp]
194.00 0.4958
AT2G30580 BMI1A, DRIP2 DREB2A-interacting protein 2 (... Potri.005G219000
[exp]
203.99 0.4980
AT3G59770 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSO... Potri.013G128500
[exp]
209.16 0.4744

Potri.016G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.