Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09060 859 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 330 / 3e-102 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 295 / 1e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 286 / 4e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 276 / 2e-82 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 279 / 4e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 275 / 7e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 266 / 7e-80 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63080 262 / 2e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 262 / 5e-78 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 311 / 5e-96 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 309 / 2e-94 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 304 / 5e-93 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 287 / 5e-87 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 283 / 4e-86 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 289 / 6e-85 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 280 / 8e-85 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G250700 [exp] 284 / 2e-84 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 285 / 4e-84 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030513 [exp] 899 / 0 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 340 / 5e-106 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 334 / 9e-104 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 293 / 4e-88 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 280 / 7e-84 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 272 / 7e-80 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 271 / 4e-79 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 265 / 1e-78 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014247 [exp] 262 / 2e-78 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 268 / 5e-78 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G111600.3 pacid=42809014 polypeptide=Potri.016G111600.3.p locus=Potri.016G111600 ID=Potri.016G111600.3.v4.1 annot-version=v4.1 ATGGTCGAGCTCCCCAAACCTCTCTCAGCAAGACAACTCTTCAAGCTCCTCAAAGCCGAAAAAAGCCCAAAATCAGCACTCGCCTTGTTCGACTCAGCGA GTCGCCAACCAGGTTACACTCACTCGCCACACATTTTTCTCCTCATTCTCCGTCGACTCTCTGATCCAAAACTCGTGGTCCACGTGACTCGAATAGTTGA ACTAATCAAAACCCAGAAATGTAAATGCACAGAAGATGTTGTTTTAACAGTTTTGAAAGCTTATGCAAAAAGCAAGATGCCAAACGAAGCCTTGGATTGC TTCCAAAAAATGGAAGAGATTTTTGGGTGCAAGCCTGGAATAAGATCTTACAATGCTTTGTTAAATGCTTTTATTGAAGCAAATCTGTTAGAAAAAGCAG AGTCTTTTCTTGCTTATTTTGAAACAGTGGGCATCTTGCCTAATTTGCAAACATATAATATTTTGATCAAGATTTCTGTTAAGAAGAGACAATTTGTCGA GGCAAAAGGGTTGTTGGATTGGATGTGGAGTAAGGACTTAAAGCCTGATGTGTATAGCTATGGTACTGTGATTAATGGGATGGTGAAAAGTGGGGATTTG GTAAGTGCACTTGAGGTGTTTGATGAAATGTTTGAAAGAGGTTTAGTTCCTGATGTGATGTGTTATAATATAATGATCGATGGGTTTTTTAAGAGAGGGG ATTATGTTCAGGGGAAAGAGATTTGGGAAAGGTTAGTTAAAGGGTCTTGTGTTTATCCAAATGTGGTTACTTATAATGTTATGATTAATGGGTTGTGTAA AATGGGGAGGTTTGATGAGAGTTTAGAAATGTGGGAGAGAATGAAGAAGAATGAGTGTGAAATGGATTTGTTTACGTATAGCAGTTTGATATGTGGGTTA TGCGATGTGGGAAATGTTGATGGAGCTGTGGAGGTTTATAAAGAAATGGTCAAGAGAAGTGTGGTGGTTGATGTTGTTACTTATAATGCATTGCTTAATG GGTTTTGCCGTGCAGGGAAGATTAAGGAGAGTTTTGAATTGTGGGTTATGATGGGGAAGGAGAATTGTCATAATGTTGTTAGTTATAACATATTTATCAG AGGATTGTTTGAAAATAGGAAGGTTGAAGAAGCTATTTCTGTTTGGGAACTCTTGCGTAGGAGGGGGAGTGGAGCTGATTCTACAACTTATGGAGTTTTG ATTCACGGGTTGTGTAAGAATGGGCATTTGAATAAGGCTTTGAAAATATTGAAAGAGGCAAAAGATGGAGGAGATAAGCTGGACGCTTTTGCATATTCTT CGATAGTCGATGGCTTAAGCAAACAAGGGAGAGTAGATGAAGCATTGGGCATAGTGCATCAGATGGATAAGTATGGCTGTGAGTTGAGTCCTCATGTTTG CAATCCATTGATTAATGGTTTTGTCCGAGCTTCCAAACTTGAGGAGGCAATTTGTTTTTTCAGAGAAATGGAAACCAAAGGTTGTTCTCCTACTGTTGTC TCCTATAACACTCTTATAAATGGTCTGTGCAAGGCAGAGAGATTTAGCGATGCATATTCTTTTGTAAAGGAAATGCTAGAAAAAGATTGGAAGCCAGACA TGATCACTTATAGCTTATTGATGGATGGCCTCTGTCAAGGCAAAAAGATTGATATGGCCCTCAACCTGTGGCGTCAAGTTCTTGTCAAGGGTTTGGAGCC TGATGTAACCATGCACAACATTTTGATGCACGGACTTTGCTCTGCAGGAAAAATTGAAGATGCTTTGCTGCTCTATTCAAATATGAAGCAGTCAAACTGT CTTCCCAATCTTGTTACGCATAACACACTCATGGATGGGCTTTATAAAGCCAGAGAGTGCGAGATGGCATCAGTGATTTGGGCTTGCATGTTCAAGAATG GGTTTCAACCGGATATAATCTCCTACAATATTACACTCAAAGGGCTTTGTTCTTGTGGTAGAATATCAGATGGCATAGCGCTCTTCGATGATGCCTTGAA ACACGGAATACTCCCAACCTCCATTACATGGTATATACTTGTCAGAGCCGTTTTAAAGCTGGGACCTCTTGATTCATTGTCCTGA
AA sequence Show only first row Show all	>Potri.016G111600.3 pacid=42809014 polypeptide=Potri.016G111600.3.p locus=Potri.016G111600 ID=Potri.016G111600.3.v4.1 annot-version=v4.1 MVELPKPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTRIVELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDC FQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDL VSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGL CDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVL IHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVV SYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNC LPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKHGILPTSITWYILVRAVLKLGPLDSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09060			Pentatricopeptide repeat (PPR)...		Potri.016G111600 [exp]	0	1
AT3G22430			unknown protein		Potri.008G024500 [exp]	1.41	0.8437
AT5G08450			unknown protein		Potri.018G145546 [exp]	4.24	0.8232
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.001G463700 [exp]	4.47	0.8359
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	8.30	0.8366
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	8.60	0.8371	MOM.2,1
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	13.56	0.8245
AT2G29210			splicing factor PWI domain-con...		Potri.009G036900 [exp]	17.29	0.7838
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	17.66	0.8010	SIN1.1,DCL902
					Potri.012G066900 [exp]	20.00	0.8134
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	20.85	0.8329

Compare expression of checked genes

Potri.016G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.