Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 798 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 783 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 666 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 617 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 551 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G40460 447 / 1e-151 Major facilitator superfamily protein (.1) AT1G68570 445 / 2e-150 Major facilitator superfamily protein (.1) AT5G46050 431 / 4e-145 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 429 / 3e-144 Major facilitator superfamily protein (.1) AT4G21680 423 / 7e-142 NRT1.8 NITRATE TRANSPORTER 1.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G042400 [exp] 839 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 823 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 809 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 802 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 682 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 626 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 486 / 2e-166 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 485 / 1e-165 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 482 / 9e-165 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021132 [exp] 892 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10018207 [exp] 806 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 783 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040698 [exp] 693 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 681 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 680 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 667 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 660 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 622 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011786 [exp] 496 / 5e-170 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.016G111900.1 pacid=42810190 polypeptide=Potri.016G111900.1.p locus=Potri.016G111900 ID=Potri.016G111900.1.v4.1 annot-version=v4.1 ATGGCAGAAGATGGCTTTACCAAAGATGGAGCAGCAGATTTCCGTGGAAACCCTGCTATCAAGAAGGAAACAGGAACTTGGAAAGCCTGCCCTTATATTT TAGGAAATGAATGCTGCGAAAGGTTGGCCTACTATGGAATCAACACAAATCTAGTTAATTACCTCAAATTTCAACTAAACCAGAGCAATGTTGTGGCGGT CAATAACGTCACCAATTGGTCAGGAACATGCTATGTCATGCCATTGCTTGGAGCTTTTCTTGCTGATGCCTACTTGGGAAGATATTGGACAATTGCTAGT TTCTCTATAATCTATGTCTTTGGAATGACATTGTTGACATTGTCATCATCGATCCATGGACTAAAACCATCTTGTGACCGAACGAATGTTTGCCATACAA CAGGGTTGCAGACATCAGTTTTCTTTCTAGGCCTATACCTTATAGCCCTGGGGACTGGAGGGATCAAGCCTTGTGTCTCTTCCTTTGGTGCGGATCAATT CGATGACTCTGACGAGGATGAGAAGAAAAAGAAGAGTTCTTTCTTCAATTGGTTCTATTTTTCAATCAATATCGGCGCTCTTATTGCTGCTTCTGTGCTT GTTTGGATACAGACCAATGTAGGCTGGGGCTGGGGCTTTGGCATCCCAGCAGTGGCAATGGCAATTGCTGTTGTGAGTTTCTTTTCAGGCACACGGTTAT ACAGGAACCAGAGACTTGGAGGGAGTCCCTTAACACGCATGTGCCAAGTGCTAGTTGCATCCTTCAGGAAATTCCGTGTCGAAGTGCCTAATGACAAGTC TCTTCTGTTTGAGACAGCAGACCATGAATCTGCTGTCATGGGAAGCCGCAAACTTGACCACACAGATCAGTTAAGTTTCTTTGACAAGGCAGCAGTGGAG ACTCCATCAGACCGTCTAAAAGGGTCCGCGAATCAGTGGAAACTGTGCACCGTGACTCAGGTTGAAGAGCTCAAGTCCATCATTCGGTTGCTTCCTGTAT GGGCAACTGGCATAATATTTTCTGCTGTATACAGTCAAATGGGAACCTTATTTGTCCTGCAGGGAAACACAATGGACCTTCGCATGGGCAAATCCTTCGA AATCCCTTCTGCTTCACTCTCCCTCTTTGACACAATTAGTGTAATCTTCTGGGTACCGATTTACGACCGTGCCATCGTGCCCTTTGCAAGAAGATTTACT GGACACAAGAATGGATTCACACAGCTTCAAAGAATTGCAATTGGCCTTGTAATTTCCATCTTTGCCATGTTGGTTGCTGGGACTCTAGAGCTTGTGAGAC TCCGCGAGGTCAGAAAACATAACTACTATGAACTAAAGCACATACCAATGTCCATATTTTGGCAGGTCCCTCAGTATTTCATTATAGGATGTGCAGAAGT TTTCACATTTATCGGGCAATTAGAGTTCTTTTATGAGCAGGCACCCGATGCCATGAGGAGCCTTTGCTCAGCTCTCTCACTCACAACCGCTGCACTTGGG AACTACTTGAGCACATTCCTAGTTAATATTGTCACGGATATGAGCACCAGGCATGGTAAGCCTGGTTGGATACCGGACAATTTGAATCATGGCCATCTTC ATTATTTTTTCTGGCTCTTGGCAGTGTTGAGTGTGCTCAACTTGGGGGTCTATCTTTTGGTTGCCAGATGGTACACTTACAAGAAAGCTGTGGTGTCCAG TGATTGA
AA sequence Show only first row Show all	>Potri.016G111900.1 pacid=42810190 polypeptide=Potri.016G111900.1.p locus=Potri.016G111900 ID=Potri.016G111900.1.v4.1 annot-version=v4.1 MAEDGFTKDGAADFRGNPAIKKETGTWKACPYILGNECCERLAYYGINTNLVNYLKFQLNQSNVVAVNNVTNWSGTCYVMPLLGAFLADAYLGRYWTIAS FSIIYVFGMTLLTLSSSIHGLKPSCDRTNVCHTTGLQTSVFFLGLYLIALGTGGIKPCVSSFGADQFDDSDEDEKKKKSSFFNWFYFSINIGALIAASVL VWIQTNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQRLGGSPLTRMCQVLVASFRKFRVEVPNDKSLLFETADHESAVMGSRKLDHTDQLSFFDKAAVE TPSDRLKGSANQWKLCTVTQVEELKSIIRLLPVWATGIIFSAVYSQMGTLFVLQGNTMDLRMGKSFEIPSASLSLFDTISVIFWVPIYDRAIVPFARRFT GHKNGFTQLQRIAIGLVISIFAMLVAGTLELVRLREVRKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALG NYLSTFLVNIVTDMSTRHGKPGWIPDNLNHGHLHYFFWLLAVLSVLNLGVYLLVARWYTYKKAVVSSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111900 [exp]	0	1
AT1G21400			Thiamin diphosphate-binding fo...		Potri.002G074900 [exp]	1.00	0.9143
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Potri.013G015100 [exp]	10.19	0.8555
					Potri.001G073350 [exp]	13.30	0.8893
AT4G25433			peptidoglycan-binding LysM dom...		Potri.015G137500 [exp]	15.06	0.6735
					Potri.010G199150 [exp]	18.81	0.8827
AT4G33870			Peroxidase superfamily protein...		Potri.001G182400 [exp]	18.97	0.8829
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	21.72	0.8818
					Potri.006G216950 [exp]	22.64	0.8815
AT3G30387			Protein of unknown function (D...		Potri.004G110681 [exp]	27.69	0.8796
					Potri.005G011350 [exp]	28.14	0.8797

Compare expression of checked genes

Potri.016G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.