Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01210 613 / 0 HXXXD-type acyl-transferase family protein (.1) AT2G39980 590 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G42830 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) AT5G07850 266 / 5e-84 HXXXD-type acyl-transferase family protein (.1) AT5G07870 262 / 2e-82 HXXXD-type acyl-transferase family protein (.1) AT5G07860 259 / 2e-81 HXXXD-type acyl-transferase family protein (.1) AT5G23940 234 / 3e-71 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G67150 228 / 3e-69 HXXXD-type acyl-transferase family protein (.1) AT3G50270 212 / 3e-63 HXXXD-type acyl-transferase family protein (.1) AT3G50300 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097500 [exp] 831 / 0 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 642 / 0 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 625 / 0 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 319 / 2e-104 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 313 / 5e-102 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 305 / 6e-99 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 280 / 2e-89 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 273 / 5e-87 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 273 / 5e-87 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040222 [exp] 546 / 0 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 539 / 0 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 537 / 0 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 381 / 1e-130 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 241 / 5e-74 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 233 / 8e-71 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 227 / 6e-69 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 224 / 1e-67 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 223 / 3e-67 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031725 [exp] 153 / 5e-42 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.016G112400.2 pacid=42810573 polypeptide=Potri.016G112400.2.p locus=Potri.016G112400 ID=Potri.016G112400.2.v4.1 annot-version=v4.1 ATGCCTTCTTCTTCCAATACCACTATCGTCTCAAGATGTACTATCTACCCAGACCAAAAATCCTCAACCATCAAAGCCCTAAAGCTCTCAGTCTCAGACC TCCCCATGCTCTCTTGTCAATACATCCAGAAGGGTGTCCTCCTCACGTATCCACCATACTCCATTAATGACCTCATCACATTCCTCAAACACTCCCTCTC CGTCGCTCTTTCTCACTTCCCTGCTCTTGCTGGCCGCCTCCAAACTGACCCTACTGGCCATGTCCATATTGTATGCAACGATGCAGGCGTTGATTTCATC CAAGCCAAAGCAAGACACCTCTCCATCCACACCATTCTTTCTCCAACCCACGTCCCTGAATGCTTCAAAGGGTTCTTCGCAATGGACAAGACCCTTAGTT ATTCGGGTCATTCTAAACCTCTGGTGGCAGTTCAGGTCACTGAACTGAAAGACGGCATATTCATTGGGTGCACTGTAAATCATGCTGTCACTGATGGCAC TTCATTCTGGAACTTCTTCAATACCTTCGCTGAAATCTGCAAAGGATCTAAAAAAATCTCTAAATCTCCAGACTTTTCCCGCAACACCATGCTTAACTCA CCGGCGGTGCTTAAATTCCCCCCCGGTGGACCTAAGGTGACATTTTCTGGCGACGAGCCATTGCGGGAGAGAATTTTCCATTTTAGCAGAGATGCAATTC TCAAGCTCAAGTTGAGAGCTAACAACAGTAATTTTAGGTCCAATTCGGCAGAGATTTTCGGAAAGCAAAGTAACGACAGTTGGAAAATCGTTAACGGAGA AAGTAACGGGAATAACGGTTTAAGTAACGGCGAAGTAGATCCACTTTTCTTAAAGAACAACGAAACGGCAGAGATTTCATCGTTTCAGTCCCTTTGCGCG CAGCTGTGGAGATCCGTGACACGTGCGAGGAAATTATCGCCCTCCAAAATGACGACGTTTCGTATGGCTGTGAATTGCCGCCACCGGCTGGAGCCGCGGT TGGACCCGTATTACTTTGGCAACGCGATTCAGAGCATCCCAACCGTTGCTTTGGCTGGAAAGCTTTTATCTAAGGATCTGAGCTTTGGAGCTGATTTGCT GCACAAAAACGTCGTCGCCCATGTTGATGGTACGGTGCGGAAAGGTATAGCAAATTGGGAAAAGGAGCCGCGGTTATTTCCGTTGGGGAATCTTGATGGT GCATCAATCACCATGGGAAGTTCTCCAAGATTCCCTATGTATGATAACGATTTTGGGTGGGGCCGACCTTTGGCTGTGAGGAGTGGTAGGGCCAATAAAT TTGATGGGAAGATATCAGCTTTTCCTGGGAGAGATGGAAATGGGAGCGTTGATCTTGAGGTTGTTTTGTCACCTGACACAATGACTGGTCTTGAAAACGA TGATGAGTTTATGCAATATGTTTCAGAAATTGTGTGA
AA sequence Show only first row Show all	>Potri.016G112400.2 pacid=42810573 polypeptide=Potri.016G112400.2.p locus=Potri.016G112400 ID=Potri.016G112400.2.v4.1 annot-version=v4.1 MPSSSNTTIVSRCTIYPDQKSSTIKALKLSVSDLPMLSCQYIQKGVLLTYPPYSINDLITFLKHSLSVALSHFPALAGRLQTDPTGHVHIVCNDAGVDFI QAKARHLSIHTILSPTHVPECFKGFFAMDKTLSYSGHSKPLVAVQVTELKDGIFIGCTVNHAVTDGTSFWNFFNTFAEICKGSKKISKSPDFSRNTMLNS PAVLKFPPGGPKVTFSGDEPLRERIFHFSRDAILKLKLRANNSNFRSNSAEIFGKQSNDSWKIVNGESNGNNGLSNGEVDPLFLKNNETAEISSFQSLCA QLWRSVTRARKLSPSKMTTFRMAVNCRHRLEPRLDPYYFGNAIQSIPTVALAGKLLSKDLSFGADLLHKNVVAHVDGTVRKGIANWEKEPRLFPLGNLDG ASITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGRDGNGSVDLEVVLSPDTMTGLENDDEFMQYVSEIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.016G112400 [exp]	0	1
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.009G081800 [exp]	1.00	0.9521
AT2G01300			unknown protein		Potri.010G115100 [exp]	6.92	0.8964
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.001G083500 [exp]	8.00	0.9029
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	11.13	0.8809
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.001G384200 [exp]	13.19	0.8946
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.003G147300 [exp]	14.00	0.9060
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.006G214500 [exp]	14.83	0.9179
AT3G07870			F-box and associated interacti...		Potri.011G037200 [exp]	16.30	0.7420
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	19.82	0.9149
AT2G30020			Protein phosphatase 2C family ...		Potri.010G187000 [exp]	21.07	0.7813

Compare expression of checked genes

Potri.016G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.