Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SQD2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01220 727 / 0 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT3G45100 56 / 4e-08 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G01180 53 / 4e-07 ATSS2 starch synthase 2 (.1) AT1G73370 50 / 2e-06 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT4G18240 49 / 8e-06 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT3G15940 48 / 1e-05 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G52420 47 / 2e-05 UDP-Glycosyltransferase superfamily protein (.1) AT1G32900 45 / 6e-05 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT1G73160 45 / 7e-05 UDP-Glycosyltransferase superfamily protein (.1) AT5G20830 45 / 8e-05 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097600 [exp] 824 / 0 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G130000 [exp] 60 / 2e-09 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G179000 [exp] 53 / 2e-07 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.017G084100 [exp] 52 / 5e-07 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.012G037200 [exp] 52 / 6e-07 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 51 / 1e-06 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 51 / 1e-06 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.001G351800 [exp] 49 / 7e-06 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.017G139100 [exp] 46 / 4e-05 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002499 [exp] 742 / 0 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 643 / 0 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10024892 [exp] 59 / 3e-09 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 55 / 6e-08 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011469 [exp] 52 / 5e-07 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033014 [exp] 50 / 2e-06 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 50 / 2e-06 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10017984 [exp] 50 / 4e-06 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 49 / 1e-05 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10014499 [exp] 48 / 1e-05 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF13579 [poplar] [flax] Glyco_trans_4_4 Glycosyl transferase 4-like domain
Representative CDS sequence Show only first row Show all	>Potri.016G112600.1 pacid=42809495 polypeptide=Potri.016G112600.1.p locus=Potri.016G112600 ID=Potri.016G112600.1.v4.1 annot-version=v4.1 ATGACTCGTGGTGAGGTTGGAGAAGATGAAGAGAATCCTCCTTTCCTTGATTATGAGACCATTTCGAGGCCAAGACGTATTGCCCTTTTTGTGGAGCCTT CTCCATTTGCGTATGTGTCAGGGTATAAAAACCGGTTCCAGAATTTCATCAAATTTTTACGCGAAATGGGGGATGAGGTGATGGTTGTGACAACACATGA AGGAGTGCCCCAGGAATTTTATGGAGCCAAACTGATTGGATCACGGAGCTTCCCCTTCCCCTGGTATCAGAAGGTGCCCCTTTCTCTAGCACTTAGTCCA AGAATAATTTCAGAGGTTGCACGGTTTAAGCCTGACATAATACATGCATCGTCACCTGGGATAATGGTTTTTGGTGCCCTTGCCATTGCAAAACTGTTGA GTGTCCCCATCGTGATGTCCTATCACACTCATGTCCCTGTATACATCCCAAGGTACACGTTTAGCTGGCTGGTGAAACCCATGTGGATGATCATAAAATT TCTTCACAGAGCAGCCGATCTCACACTAGTGCCATCAGCTGCTATTGGGAGGGATCTTGAAGCAGCTAGGGTGACAGCAGCTAACAAGATTCGTGTTTGG AATAAGGGTGTTGATTCTGAGAGCTTCCACCCCCGTTTCCGCTCTCATGAAATGCGAATGAGATTAAGCAATGGTGAACCTGAAAAACCATTGATAGTCC ATGTTGGACGACTTGGAGTCGAGAAGAGTTTGGATTTTCTCAAAAGGGTTATGGATAGGCTTCCAGGAGCAAGAATTGCCATTATTGGAGATGGGCCATA CAGGGAGGAGTTGGAAAAGATGTTTACTGGCATGCCTGCTGTATTTACTGGGATGTTGGGAGGAGAAGAGCTCTCTCAGGCATACGCTAGTGGGGATGTT TTCGTTATGCCTTCAGAGTCCGAAACACTTGGTCTTGTTGTTTTGGAGGCCATGTCTTCAGGAATTCCTGTAGTGGGTGCTCGTGCTGGGGGAATCCCAG ATATAATTCCTCCAGAACTGGATGGCAAAACTGGGTTTCTCTTTAATCCAGGAGATCTTAATGACTGCTTGAGCAAGTTAGAGCCTTTGTTGGATAACCA AGAACTAAGAGAAACCATTGGTAAGGCAGCACGTCAAGATACGGAGAAGTATGATTGGAAGGCAGCGACAAAGAAAATACGCAATGAACAATACAGTGCA GCCATTTGGTTCTGGCGCGAGAATAGAGCCCAGCTATTTAGACCAATTCAGTGGCTAGTAAAACGTCTTTTTCCAATCCCAGAAGTTTAA
AA sequence Show only first row Show all	>Potri.016G112600.1 pacid=42809495 polypeptide=Potri.016G112600.1.p locus=Potri.016G112600 ID=Potri.016G112600.1.v4.1 annot-version=v4.1 MTRGEVGEDEENPPFLDYETISRPRRIALFVEPSPFAYVSGYKNRFQNFIKFLREMGDEVMVVTTHEGVPQEFYGAKLIGSRSFPFPWYQKVPLSLALSP RIISEVARFKPDIIHASSPGIMVFGALAIAKLLSVPIVMSYHTHVPVYIPRYTFSWLVKPMWMIIKFLHRAADLTLVPSAAIGRDLEAARVTAANKIRVW NKGVDSESFHPRFRSHEMRMRLSNGEPEKPLIVHVGRLGVEKSLDFLKRVMDRLPGARIAIIGDGPYREELEKMFTGMPAVFTGMLGGEELSQAYASGDV FVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPPELDGKTGFLFNPGDLNDCLSKLEPLLDNQELRETIGKAARQDTEKYDWKAATKKIRNEQYSA AIWFWRENRAQLFRPIQWLVKRLFPIPEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Potri.016G112600 [exp]	0	1	SQD2.1
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.018G062100 [exp]	4.89	0.8271	Pt-CYP711.2
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	5.91	0.8474	Pt-AUX28.3
					Potri.006G088616 [exp]	8.83	0.8098
AT1G58030		CAT2	cationic amino acid transporte...		Potri.013G065000 [exp]	14.42	0.7555	Pt-CAT3.2
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G205275 [exp]	17.20	0.8121
					Potri.006G088500 [exp]	17.32	0.7956
AT4G38640			Plasma-membrane choline transp...		Potri.009G132900 [exp]	18.00	0.7918
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G001000 [exp]	22.84	0.7993	Pt-ARR5.4
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Potri.005G052400 [exp]	27.20	0.7785
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	28.84	0.7896

Compare expression of checked genes

Potri.016G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.