Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SRP.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48900 887 / 0 Signal recognition particle, SRP54 subunit protein (.1.2) AT5G49500 778 / 0 Signal recognition particle, SRP54 subunit protein (.1) AT1G15310 776 / 0 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT5G03940 192 / 9e-55 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT5G66970 133 / 2e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45770 116 / 1e-28 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT4G30600 99 / 9e-22 signal recognition particle receptor alpha subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253500 [exp] 937 / 0 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.009G047902 [exp] 463 / 2e-161 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G078600 [exp] 202 / 3e-58 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.006G211500 [exp] 198 / 1e-56 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.014G078800 [exp] 112 / 5e-27 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.018G105900 [exp] 96 / 7e-21 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.006G183600 [exp] 96 / 1e-20 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.002G155400 [exp] 58 / 1e-09 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016213 [exp] 887 / 0 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10029330 [exp] 811 / 0 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10017023 [exp] 200 / 3e-57 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10021346 [exp] 196 / 1e-55 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10041358 [exp] 108 / 1e-25 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10017891 [exp] 99 / 1e-21 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 98 / 2e-21 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10036570 [exp] 90 / 4e-19 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02492 [poplar] [flax] cobW CobW/HypB/UreG, nucleotide-binding domain CL0023 [poplar] [flax] PF02881 [poplar] [flax] SRP54_N SRP54-type protein, helical bundle domain CL0123 [poplar] [flax] HTH PF02978 [poplar] [flax] SRP_SPB Signal peptide binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G112800.1 pacid=42808991 polypeptide=Potri.016G112800.1.p locus=Potri.016G112800 ID=Potri.016G112800.1.v4.1 annot-version=v4.1 ATGGTGTTGGCAGAGTTAGGGGGGAGTATATCCCGAGCAATCCAGCAGATGAGCAATGCTACAATCATCGACGAGAAAGCATTAAACGATTGCTTGAACG AGATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTTCGTGATATGCAAACCAATATCAAGAAAATCGTCAATCTTGACGATCTCGCCGC CGGTCACAACAAGCGCAAAATCATCCAGCAAGCAATATTCAACGAGCTGTGCAAAATGTTGGACCCAGGAAAGCCATCTTTTACTCCAAAGAAAGGAAAA ACTAGTGTTGTTATGTTTGTTGGTTTACAAGGGTCGGGGAAAACAACAACATGTACGAAATATGCGTATTATCACCAGAAGAAAGGGTGGAAACCAGCGC TAGTTTGCGCTGATACTTTCAGAGCTGGTGCTTTTGATCAGCTGAAACAGAATGCTACTAAAGCTAAGATTCCATTCTATGGAAGCTATATGGAATCGGA TCCTGTTAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAGGAAAATTGTGATCTTATAATTGTTGACACTAGTGGGCGGCATAAACAGGAAGTTGCG CTTTTTGAAGAAATGCGACAAGTTGCTGAAGCAACGAAACCGGATCTTGTTATATTTGTCATGGATAGTAGTATTGGTCAAGCTGCATTTGATCAGGCTC AAGCATTTAAGCAAAGTGTTGCAGTTGGAGCTGTGATTGTTACCAAAATGGATGGTCATGCTAAGGGTGGTGGTGCACTTAGTGCTGTTGCAGCAACAAA GAGTCCTGTCATTTTTATTGGCACAGGAGAGCATATGGATGAGTTTGAAGTCTTCGATGTTAAACCTTTTGTTAGTCGGCTTTTAGGTATGGGTGATTGG TCTGGTTTCATGGACAAAATCCATGAGGTTGTTCCTATGGATCAACAACCAGAGCTTCTGCAAAAACTTTCTGAAGGGAACTTTACCTTGAGGATTATGT ATGAACAATTCCAGAATCTACTAAAAATGGGTCCCATTGGGCAGGTGTTTTCAATGCTTCCTGGATTTAGTTCTGAATTAATGCCAAAAGGTCGTGAAAA GGAAAGCCAGGCAAAGATTAAGCGCTATATGACCATGATGGATTCAATGACTAATGAAGAGTTGGATAGTTCAAATCCAAAGCTTATGAATGAGTCACGT ATTATGAGGATAGCACGGGGTTCAGGCCGTTCAGTTAGAGATGTAATGGAAATGTTGGAAGAGTACAAACGACTTGCTAAGATCTGGAGCAAAATGAAGG GACTTAAGATTCCAAAGAAGGGTGAAATGAGTGCCCTTTCTAGAAACATGAATGCACAACACATGAGCAAAGTTCTCCCACCACAGATGTTGAAGCAGAT TGGTGGTATGGGTGGCTTGCAAAATTTGATGAAGCAAATGGGTTCTGCCAAGGACATGATGGGCATGTTTGGAGGTGGGGACAAGTAA
AA sequence Show only first row Show all	>Potri.016G112800.1 pacid=42808991 polypeptide=Potri.016G112800.1.p locus=Potri.016G112800 ID=Potri.016G112800.1.v4.1 annot-version=v4.1 MVLAELGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAIFNELCKMLDPGKPSFTPKKGK TSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEVA LFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNLLKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESR IMRIARGSGRSVRDVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMFGGGDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48900			Signal recognition particle, S...		Potri.016G112800 [exp]	0	1	SRP.3
AT5G37475			Translation initiation factor ...		Potri.017G138300 [exp]	1.41	0.7709
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.010G137600 [exp]	7.07	0.6441
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Potri.017G146200 [exp]	16.30	0.6768
AT3G08990			Yippee family putative zinc-bi...		Potri.006G015500 [exp]	27.49	0.6628
AT4G32750			unknown protein		Potri.018G038600 [exp]	32.95	0.6777
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Potri.004G207000 [exp]	47.32	0.6724	HSK.1
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.001G400900 [exp]	58.97	0.5987
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G024400 [exp]	66.52	0.6148
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	73.11	0.5672
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	86.08	0.6117

Compare expression of checked genes

Potri.016G112800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.