Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09030 525 / 0 BTB/POZ domain-containing protein (.1) AT5G41330 185 / 3e-53 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT4G30940 76 / 1e-14 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G24240 70 / 1e-12 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102300 [exp] 201 / 4e-59 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.003G129300 [exp] 197 / 2e-57 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.006G185300 [exp] 64 / 6e-11 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.018G107600 [exp] 64 / 1e-10 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.019G038400 [exp] 47 / 1e-05 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.013G062500 [exp] 47 / 2e-05 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004834 [exp] 298 / 1e-98 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10017502 [exp] 194 / 2e-56 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10024643 [exp] 192 / 1e-55 AT5G41330 580 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10028780 [exp] 192 / 2e-55 AT5G41330 544 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10032277 [exp] 191 / 4e-55 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10002501 [exp] 189 / 4e-55 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10038089 [exp] 155 / 8e-45 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1) Lus10021855 [exp] 67 / 9e-12 AT2G24240 742 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10036274 [exp] 59 / 5e-09 AT2G24240 740 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF02214 [poplar] [flax] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.016G112900.1 pacid=42809372 polypeptide=Potri.016G112900.1.p locus=Potri.016G112900 ID=Potri.016G112900.1.v4.1 annot-version=v4.1 ATGGAAAACGAAATTTCCAATTCTACCGCTAACACCCTCCCCAGCGATCGTATCAAGCTCAACGTTGGAGGCAAGCTTTTTGAAACCACAATATCCACAC TCCAATCGGGTGGTCCGGATTCACTCTTATCCACTCTCTCGACCCGACCTGGCCATGACCCGATTTTCATTGACCGAGACCCGGAGATTTTCTCCGTCCT CCTTTCTCTACTCCGCTCCAACCGTCTCCCCTCCACTGCACGCCGTTTCTCTAAGCAAGAACTCGCCGACGAGGCTCTCTACTACGGCATTGATTCGCAC ATCCGCGACGCCATCTCTCCTCCTCCTCTCTCTGGAATTGATGCTTCAATCGTCTCCACCATCTGCCCCGCCTCTGACGGCCTCGTATCCTCATTCACCG CGGCCGCAGACGACGGCTCTGTCTGCACTGCTCACGGCGGCCAAATCTCCTTCTACGATCACAACCTAACCCACCTCTCCACAGTCCGTACGCACCTCGA AGATATCACCTCTATCCGCCACGTATGGCCCGATGTCGCCGCCGTCGGTTCAGAATCCGCCGCGGGGATCCATTTCTACAATTTCTCCACCGCGCGTTAC ATCGAGTCAATTCACTGGACTGACTCGACCGATCCGAGAATCTACAAAGCGCGAGTCAGCTCAATCGCTGACTCATCAAGTCAAATCTTTGCCTCCTTTG ACTGTCCACACAGAGAGAACTGCATACTATCAATAGACAAATCAACGCTTCAGATCTCATCAGAGATCACGAGACAATCGGGGGGCGCTTCCAAGAACAC GGTCCCCGGGAAGCTGACGTGGCTTCCGGAGACCGGCGCATTAATCGGATCGGCGGTTACATGTGGGGCGTTTGGTTATTCAGGATATATTAGAATGTGG GACCCACGGAATGGGGAGGTGATTTGGGAGACGAGTGAGCCAGGTTCGGGACGAAGCAGCAGGTTCGGAGATTCGTTTGCGGACGTGGACGTTGACGTGG GTGGGTTGACGTTGTTTAAAGTCTGCTCGAAGTCTGGTGATTTAGCAGTGGCAGATTTGCGCAAGTTAGGGGATGATCCGTGGGTCTATATTAACGAGAA GAACCCTAGCATGAGATTTATTGGTGGTGCAAGTAGTAGTGTGCTACATTGTTACAAGAGCCAGGTTTTTGTAGGAAGAGATGGGAGTTTAGAGGTTTGG TCAAAAGAGAATAACGGAGTTGGAGAGGGGTTGTATAGGAGAAATTTTGTGGATAAAGTGGAGGATTCAAACAGAGGGGTGGTAAGGAAAATTGAAGGTG GCGGAGATAGGTTGTTTGTTAGTAGGGAAAATGTTGAGGGTATTGAAGTGTGGGAAAGTTCTTATTTTTCTGGTGCAATTTTGGTTTAG
AA sequence Show only first row Show all	>Potri.016G112900.1 pacid=42809372 polypeptide=Potri.016G112900.1.p locus=Potri.016G112900 ID=Potri.016G112900.1.v4.1 annot-version=v4.1 MENEISNSTANTLPSDRIKLNVGGKLFETTISTLQSGGPDSLLSTLSTRPGHDPIFIDRDPEIFSVLLSLLRSNRLPSTARRFSKQELADEALYYGIDSH IRDAISPPPLSGIDASIVSTICPASDGLVSSFTAAADDGSVCTAHGGQISFYDHNLTHLSTVRTHLEDITSIRHVWPDVAAVGSESAAGIHFYNFSTARY IESIHWTDSTDPRIYKARVSSIADSSSQIFASFDCPHRENCILSIDKSTLQISSEITRQSGGASKNTVPGKLTWLPETGALIGSAVTCGAFGYSGYIRMW DPRNGEVIWETSEPGSGRSSRFGDSFADVDVDVGGLTLFKVCSKSGDLAVADLRKLGDDPWVYINEKNPSMRFIGGASSSVLHCYKSQVFVGRDGSLEVW SKENNGVGEGLYRRNFVDKVEDSNRGVVRKIEGGGDRLFVSRENVEGIEVWESSYFSGAILV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09030			BTB/POZ domain-containing prot...		Potri.016G112900 [exp]	0	1
AT1G01730			unknown protein		Potri.015G145000 [exp]	3.31	0.8266
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	5.47	0.7999	MBD905,Pt-MBD5.1
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	10.48	0.7841
AT2G17030			F-box family protein with a do...		Potri.004G179685 [exp]	15.23	0.7256
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	15.77	0.7893
					Potri.015G008200 [exp]	15.87	0.7452
AT2G15560			Putative endonuclease or glyco...		Potri.004G140400 [exp]	16.37	0.7879
					Potri.005G130601 [exp]	17.43	0.7649
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	22.73	0.7577
AT4G21215			unknown protein		Potri.011G026900 [exp]	24.33	0.7237

Compare expression of checked genes

Potri.016G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.