Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35335 581 / 0 Nucleotide-sugar transporter family protein (.1) AT5G41760 207 / 2e-64 Nucleotide-sugar transporter family protein (.1.2) AT2G43240 137 / 5e-37 Nucleotide-sugar transporter family protein (.1.2) AT3G59360 135 / 2e-36 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT5G65000 54 / 5e-08 Nucleotide-sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094600 [exp] 205 / 1e-63 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.003G136800 [exp] 200 / 1e-61 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.008G077300 [exp] 153 / 8e-43 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 145 / 7e-40 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.017G035800 [exp] 138 / 3e-37 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.007G092800 [exp] 60 / 6e-10 AT5G65000 429 / 6e-152 Nucleotide-sugar transporter family protein (.1.2) Potri.005G075600 [exp] 58 / 3e-09 AT5G65000 461 / 2e-164 Nucleotide-sugar transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026562 [exp] 574 / 0 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 515 / 0 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10037204 [exp] 236 / 2e-75 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10036726 [exp] 219 / 4e-68 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10025486 [exp] 137 / 1e-36 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10027009 [exp] 137 / 2e-35 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026182 [exp] 62 / 2e-10 AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2) Lus10042484 [exp] 53 / 1e-07 AT5G65000 341 / 1e-116 Nucleotide-sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.016G113200.4 pacid=42809498 polypeptide=Potri.016G113200.4.p locus=Potri.016G113200 ID=Potri.016G113200.4.v4.1 annot-version=v4.1 ATGGAATACAGGAAAATCAAAGACGAGGAAGATCAAATTGGGGATGGTGTTGTTGGAGACGCAGTAACTTCAAGAGGAGTTTCTCCATCCAAGGTTACTA GTTTTCCGACTGGCTCAGTTGACCGGTTGCGCTGGAAGCGCAAGATGGTTGTTACGCTTGCATTAACGATTCTTACAAGTTCACAAGCAATACTCATTGT TTGGTCTAAGCGAGCTGGCAAGTATGAGTATAGTGTTACTACAGCGAATTTCATGGTAGAAACTTTGAAATGTGCATTATCACTCGCCGCGTTGGCAAGA ACATGGAAGAAGGAAGGCGTTACAGAAGATAACAGGTTGAGCACAACATTCGATGAAGTTAAAGTTTACCCCATTCCCGCGGCACTTTACCTTGTCAAGA ATTTGCTTCAGTATTACATTTTCGCTTATGTCAATGCCCCGGGCTATCAGATATTGAAGAATCTCAATATTATTAGCACTGGTGTCTTATATCGAATAAT ACTTAAGAGAAAGTTAAGTGAGGTTCAGTGGGCTGGTTTCATACTTTTATGTGCTGGCTGTACCACAGCGCAACTAAACCCTACTTCAGACCATGTTCTT GAAACACCTTTACAAGGTTGGATGATGGCCATTGTAATGGCACTTTTAAGTGGTTTTGCAGGAGTGTACACTGAGGCTATAATTAAAAAACGTCCTTCGA GGAACATAAATGTGCAGAACTTCTGGCTGTATGTCTTTGGGATGATCTTTAATGCTTTGGCTATAGTAACTCAAGATTTTGATGCAGTTGTGAACAAGGG GTTCTTCTATGGATACTCATTGATCACAACTCTCATGATACTCAATCACGCACTCAGTGGTATTGCTGTATCCATGGTAATGAAGTTTGCAGACAACATT GTAAAGGTGTATTCTACCTCAGTGGCAATGCTTCTTACTGCAGTTGTCTCTGTGTTTCTATTTGACTTTCACCTGTCCCTTGCATTTTTCCTTGGCTCAA CAGTTGTTTCTGTTTCGGTGTATTTACATTCTGTTGGGAAGATGCAAAGATAG
AA sequence Show only first row Show all	>Potri.016G113200.4 pacid=42809498 polypeptide=Potri.016G113200.4.p locus=Potri.016G113200 ID=Potri.016G113200.4.v4.1 annot-version=v4.1 MEYRKIKDEEDQIGDGVVGDAVTSRGVSPSKVTSFPTGSVDRLRWKRKMVVTLALTILTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCALSLAALAR TWKKEGVTEDNRLSTTFDEVKVYPIPAALYLVKNLLQYYIFAYVNAPGYQILKNLNIISTGVLYRIILKRKLSEVQWAGFILLCAGCTTAQLNPTSDHVL ETPLQGWMMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMIFNALAIVTQDFDAVVNKGFFYGYSLITTLMILNHALSGIAVSMVMKFADNI VKVYSTSVAMLLTAVVSVFLFDFHLSLAFFLGSTVVSVSVYLHSVGKMQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35335			Nucleotide-sugar transporter f...		Potri.016G113200 [exp]	0	1
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	1.41	0.9417
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	3.00	0.9427
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	5.74	0.9388	Pt-PRO1.4
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.005G235300 [exp]	6.70	0.9242
AT1G26940			Cyclophilin-like peptidyl-prol...		Potri.010G012900 [exp]	8.71	0.9376
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	9.64	0.9152	Pt-DET3.1
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	12.64	0.9192
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.010G141900 [exp]	12.96	0.9347	Pt-SAR1.2
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	13.03	0.9285
AT3G49720			unknown protein		Potri.009G082400 [exp]	13.49	0.9260

Compare expression of checked genes

Potri.016G113200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.