Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00430 523 / 0 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 514 / 0 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 489 / 4e-177 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT3G61430 488 / 3e-176 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G23400 485 / 4e-175 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT4G35100 398 / 4e-141 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT3G54820 397 / 2e-140 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G37170 397 / 3e-140 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G16850 393 / 7e-139 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37180 390 / 1e-137 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G098100 [exp] 533 / 0 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 519 / 0 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 513 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.003G128600 [exp] 503 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G128200 [exp] 412 / 3e-146 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 409 / 4e-145 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 406 / 5e-144 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 405 / 1e-143 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 396 / 3e-140 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028273 [exp] 518 / 0 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10032283 [exp] 498 / 4e-180 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 498 / 4e-180 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10035483 [exp] 491 / 1e-177 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014840 [exp] 455 / 6e-163 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10023184 [exp] 399 / 5e-141 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10019934 [exp] 395 / 1e-139 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 394 / 2e-139 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 390 / 9e-138 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 390 / 1e-137 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.016G113300.1 pacid=42809819 polypeptide=Potri.016G113300.1.p locus=Potri.016G113300 ID=Potri.016G113300.1.v4.1 annot-version=v4.1 ATGGAGGGGAGAGAAGAAGATGTGCGGGTCGGAGCAAATAAGTATGGAGAGAGGCAACCTATAGGAACGGCTGCTCAAGCCCAAGATGTCAAGGACTACA CAGATCCACCTCCAGCGCCACTTTTTGAGCCTGGAGAGTTGTCATCATGGTCTTTTTACAGGGCAGGCATTGCTGAATTTGTTGCCACTTTCTTGTTCCT TTACATCACAGTCCTCACTGTCATGGGCGTGGCGAAATCCCCCACCAAGTGTTCCACGGTTGGCATTCAGGGCATTGCTTGGGCTTTTGGTGGGATGATT TTTGCTCTTGTCTATTGCACTGCTGGCATTTCAGGAGGTCACATCAACCCAGCTGTGACTTTTGGACTGCTGTTGGCAAGGAAGTTGTCGTTGACAAGGG CGGTGTTTTACATGCTAATGCAGTGTCTAGGAGCAATATGCGGAGCCGCTGTTGTAAAAGCTTTTCAAAAGAGCCAGTACGAGATGCTTGGTGGTGGTGC TAACACTGTCAGCACAGGTTACGCCAAGGGCAGTGGACTTGGAGCTGAGATTGTTGGCACCTTTGTACTTGTTTACACTGTCTTCTCCGCCACCGATGCC AAGCGCAATGCCAGAGACTCCCATGTTCCTATCCTGGCACCACTGCCTATTGGATTTGCAGTGTTCTTGGTGCACCTGGCAACCATTCCTATTACAGGCA CAGGCATTAACCCAGCCAGAAGTCTTGGTGCAGCCCTCATCTACAACAAAGACCAAGCTTGGGATGACCACTGGATCTTCTGGGTAGGACCATTCATTGG AGCAGCACTTGCATCCTTGTACCACCAGATCGTGATCAGGGCCATCCCTTTCAAATCCAAATGA
AA sequence Show only first row Show all	>Potri.016G113300.1 pacid=42809819 polypeptide=Potri.016G113300.1.p locus=Potri.016G113300 ID=Potri.016G113300.1.v4.1 annot-version=v4.1 MEGREEDVRVGANKYGERQPIGTAAQAQDVKDYTDPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSPTKCSTVGIQGIAWAFGGMI FALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMLMQCLGAICGAAVVKAFQKSQYEMLGGGANTVSTGYAKGSGLGAEIVGTFVLVYTVFSATDA KRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALASLYHQIVIRAIPFKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.016G113300 [exp]	0	1
AT3G13650			Disease resistance-responsive ...		Potri.001G023800 [exp]	2.23	0.8353
AT3G62160			HXXXD-type acyl-transferase fa...		Potri.014G113600 [exp]	2.44	0.8260
AT5G18460			Protein of Unknown Function (D...		Potri.013G050100 [exp]	5.65	0.8146
AT5G66120			3-dehydroquinate synthase, put...		Potri.005G110900 [exp]	8.48	0.7813
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Potri.006G109900 [exp]	13.60	0.7914
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	14.07	0.7009
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G106200 [exp]	14.45	0.7695
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	15.00	0.7188
AT3G49070			Protein of unknown function (D...		Potri.015G147400 [exp]	15.09	0.7893
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Potri.001G358200 [exp]	15.65	0.7857

Compare expression of checked genes

Potri.016G113300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.