Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSRP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38140 72 / 1e-17 PSRP4 plastid-specific ribosomal protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124700 [exp] 42 / 4e-06 AT2G21290 45 / 1e-07 unknown protein Potri.004G163100 [exp] 39 / 9e-05 AT2G21290 41 / 6e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002497 [exp] 57 / 1e-11 AT2G38140 72 / 2e-17 plastid-specific ribosomal protein 4 (.1) Lus10004829 [exp] 46 / 3e-07 AT2G38140 70 / 2e-16 plastid-specific ribosomal protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF17067 [poplar] [flax] RPS31 Ribosomal protein S31e
Representative CDS sequence Show only first row Show all	>Potri.016G113700.1 pacid=42809182 polypeptide=Potri.016G113700.1.p locus=Potri.016G113700 ID=Potri.016G113700.1.v4.1 annot-version=v4.1 ATGGCTTCACTCATGGTGGGTGCTATCCCTATGACCCCTCAAGCTCTCAACTTTGGCTCTCGCCTGTCTTATTCTCAATCGCAAATCTCTCTTTGCCATT CAACCTCTTCACTTCCACTCTCCACCGCCAGAACTTCAGTCCCATTTGTGTACTGTGGAAGAGGGGACAGGAAGACTGAAAGAGGGAAAAGATTCAACCA CTCATTTGGAAACGCGAGGCCTAGGGATAAGAAGAAAGGGAGAGGACCACCAAGAATACCAGTTCCTGGTGCTCCACCTAAGATAGATAAGTCTGTTGAT GATGAGGTTGTCAAGATTGAAATTGATGAGTCGCTTGGTTAA
AA sequence Show only first row Show all	>Potri.016G113700.1 pacid=42809182 polypeptide=Potri.016G113700.1.p locus=Potri.016G113700 ID=Potri.016G113700.1.v4.1 annot-version=v4.1 MASLMVGAIPMTPQALNFGSRLSYSQSQISLCHSTSSLPLSTARTSVPFVYCGRGDRKTERGKRFNHSFGNARPRDKKKGRGPPRIPVPGAPPKIDKSVD DEVVKIEIDESLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Potri.016G113700 [exp]	0	1	Pt-PSRP4.1
AT3G47070			unknown protein		Potri.009G043600 [exp]	1.73	0.9775
AT4G34620		SSR16	small subunit ribosomal protei...		Potri.013G128200 [exp]	3.00	0.9733
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	3.16	0.9766	Pt-RPL21.3
AT4G30845			unknown protein		Potri.006G180200 [exp]	3.46	0.9721
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	6.32	0.9711
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	8.36	0.9683
AT5G52100		CRR1	chlororespiration reduction 1,...		Potri.015G135400 [exp]	10.24	0.9612
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Potri.013G161000 [exp]	10.39	0.9635
AT1G51400			Photosystem II 5 kD protein (....		Potri.001G256900 [exp]	12.36	0.9627
AT3G23760			unknown protein		Potri.015G108200 [exp]	12.96	0.9672

Compare expression of checked genes

Potri.016G113700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.