Plant FIBer expression Database

Potri.016G114100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G098800
[exp]
148 / 8e-46 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004827
[exp]
62 / 7e-12 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.016G114100.1 pacid=42809483 polypeptide=Potri.016G114100.1.p locus=Potri.016G114100 ID=Potri.016G114100.1.v4.1 annot-version=v4.1
ATGAAAGCTGGAAGCCCATCTATGAGGAGATTATTTGACATGGAGCACACTAGTTTGGCAACCCATTTTCAGGATTCCAGTGGCTCGCCGATAATAAATC
CTATCCCTCTAGGGAGCAGTGATACTGATCCATGGGCATCCATCAGACAGACTGGGACTTCTGGGTCCGATGAACCTGGTAACTTTACTTCTGGTAGCGG
CAGGAATGGCCACTTTGAATCCAAGGATAGAAAGGCAAAGAAAAGCAATCACAAGTTAACCAGGAAAAAATCGTTTCGGAGTTTGCCAGGACTTCGTTTA
TGGAGATTTAGGAGGCCTAGTTTCAGGTTGGGACTGAAAAGGCTTAGGATTAGGATTTGTGGTAAGATTTCCTGA
AA sequence
>Potri.016G114100.1 pacid=42809483 polypeptide=Potri.016G114100.1.p locus=Potri.016G114100 ID=Potri.016G114100.1.v4.1 annot-version=v4.1
MKAGSPSMRRLFDMEHTSLATHFQDSSGSPIINPIPLGSSDTDPWASIRQTGTSGSDEPGNFTSGSGRNGHFESKDRKAKKSNHKLTRKKSFRSLPGLRL
WRFRRPSFRLGLKRLRIRICGKIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G114100
[exp]
0 1
Potri.005G098650
[exp]
4.89 0.7683
AT5G42200 RING/U-box superfamily protein... Potri.002G017400
[exp]
12.80 0.8183
AT1G53580 GLY3, GLX2-3, E... GLYOXALASE 2-3, ETHE1-LIKE, gl... Potri.001G380100
[exp]
20.29 0.7954
AT2G28085 SAUR-like auxin-responsive pro... Potri.010G226400
[exp]
21.49 0.6738 SAUR65
AT1G07370 ATPCNA1, PCNA1 proliferating cellular nuclear... Potri.010G193950
[exp]
27.22 0.7958
AT1G72210 bHLH bHLH096 basic helix-loop-helix (bHLH) ... Potri.002G101900
[exp]
32.84 0.7575
Potri.016G067501
[exp]
45.95 0.6652
Potri.019G032001
[exp]
57.70 0.7523
AT1G03990 Long-chain fatty alcohol dehyd... Potri.002G259700
[exp]
61.77 0.6704
AT3G16360 AHP4 HPT phosphotransmitter 4 (.1.2... Potri.001G189900
[exp]
65.72 0.7535

Potri.016G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.