Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 551 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 533 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052800 [exp] 954 / 0 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052900 [exp] 944 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G255600 [exp] 568 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 562 / 0 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018522 [exp] 573 / 0 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022856 [exp] 565 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039740 [exp] 555 / 0 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10024966 [exp] 501 / 7e-175 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10012601 [exp] 89 / 7e-21 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00282 [poplar] [flax] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Potri.016G114300.1 pacid=42809270 polypeptide=Potri.016G114300.1.p locus=Potri.016G114300 ID=Potri.016G114300.1.v4.1 annot-version=v4.1 ATGGGTTCTCTATCCACAAACACTACTTTCTCCCCTTTAGACCCAAATGGTTTCACCAATGATTCCAAAATGGTGATCGATTTCATTGCTGATTATTACA AGAATATTGAAAACAACCCGGTTCAAAGCCAAGTGAAACCAGGGTACTTATTGACCCAATTGCCAGACACTGCCCCATATTGCCAGGAATCCTTAGAAGA TGTTCTCAAAGATGTAACTGATAGCATTATCCCAGGCCTCACTCATTGGCAAAGCCCTAACTTCTTTGCTTACTTCCAAGCAAATGCAAGCACCGCAGGG TTTGTTGGTGAGATGCTCTGCACAGGCCTTAATGTTGTTGGCTTCAACTGGATTGCATCTCCTGCTGCTACCGAACTGGAATCCATTGTAATGGATTGGA TGGGAAAGATGCTCAAGCTCCCATCTACTTTTTTGTTCTCAGGAAACGGAGGTGGTGTCTTGCACGGTAGCACTTGTGAGGCTATAGTTTGCACCCTAGT TGCAGCAAGAGACGAGACCTTGAGAATGATTGGAGCTGAAAACATTACGAAGCTGGTAGTTTATGCCTCTGATCAAACTCATTCAACTCTACTTAAGGGC GTCAAATTAGTTGGGATTCCATCCTCTAATTTTCGATGCCTCTCTACCTCATTTTCATCGGAATTTTCGTTATCACCTCAAGCATTGGAAGTTGCAATTG AAAATGATATCAAAGCTGGATTTGTGCCCTTATTTTTATGCGCTACTGTAGGCACTACAGCATGTGGAGCTGTTGATCCTGTTATGGATCTGGGGAAAAT TGCCAGGAAATATAATCTATGGTTCCACATTGATGCAGCTTACGCAGGTAGTGCATGCATATGCCCTGAATTCAGGCATTACCTGGATGGAGTAGAACTT GCAGACTCGTTGAGCATGAATCCACATAAATGGTTACTCACTAACATGGATTGTTGCTGCTTGTGGGTTAAGCAGCCTCGTTTATTAATCGAGTCACTGT CCAGTGATGCAGAATACTTGAGGAACAATGCCAGTGAATCAAATGACGTAGTGGACTACAAAGATTGGCAAATTGCATTGAGTAGGCGATTCAGAGCTCT GAAGCTTTGGATTGTGATTCGTAGGCATGGATTAGAAAACCTTATGTACCATATTCGTAGCGATGTGAGCTTGGCTAAGCGGTTTGAGTCACTGGTGGCT AAAGACAGTAGGTTTGAGGTGGTGGTGCGAAGGAGGTTTTCTTTGGTTTGTTTTAGGCTCAAGCACAACGATGAATGCCAAGGCTTGGAATTGAACCGTA AGCTTCTAGCTGCAGTGAATGAAAGTGGTCGTGCATTCATGACTCACGCGGTGGTTGGTGGCTTGTTTATCATACGCTGTGCGATCGGATCAACCTTGAC TGAAGAACGACATGTAGATGATTTGTGGAAGTTGATTCAAGAAACGGCAGCAGATCTTGTCAAAGAAACAGGTGCTATTGGATAA
AA sequence Show only first row Show all	>Potri.016G114300.1 pacid=42809270 polypeptide=Potri.016G114300.1.p locus=Potri.016G114300 ID=Potri.016G114300.1.v4.1 annot-version=v4.1 MGSLSTNTTFSPLDPNGFTNDSKMVIDFIADYYKNIENNPVQSQVKPGYLLTQLPDTAPYCQESLEDVLKDVTDSIIPGLTHWQSPNFFAYFQANASTAG FVGEMLCTGLNVVGFNWIASPAATELESIVMDWMGKMLKLPSTFLFSGNGGGVLHGSTCEAIVCTLVAARDETLRMIGAENITKLVVYASDQTHSTLLKG VKLVGIPSSNFRCLSTSFSSEFSLSPQALEVAIENDIKAGFVPLFLCATVGTTACGAVDPVMDLGKIARKYNLWFHIDAAYAGSACICPEFRHYLDGVEL ADSLSMNPHKWLLTNMDCCCLWVKQPRLLIESLSSDAEYLRNNASESNDVVDYKDWQIALSRRFRALKLWIVIRRHGLENLMYHIRSDVSLAKRFESLVA KDSRFEVVVRRRFSLVCFRLKHNDECQGLELNRKLLAAVNESGRAFMTHAVVGGLFIIRCAIGSTLTEERHVDDLWKLIQETAADLVKETGAIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.016G114300 [exp]	0	1
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Potri.002G249901 [exp]	2.44	0.9981
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G165200 [exp]	4.58	0.9967
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.001G169000 [exp]	5.65	0.9973
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	5.65	0.9963
AT2G05100		LHCB2.3, LHCB2....	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.014G165100 [exp]	7.48	0.9920	LHCB2.2,Lhcb2-1
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.003G065266 [exp]	8.48	0.9974
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Potri.005G153600 [exp]	9.16	0.9973	Pt-CER2.1
AT3G02645			Plant protein of unknown funct...		Potri.003G205900 [exp]	15.49	0.9929
AT1G54820			Protein kinase superfamily pro...		Potri.005G036600 [exp]	17.49	0.9962
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	18.13	0.9930

Compare expression of checked genes

Potri.016G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.