Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) AT1G23330 199 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029200 [exp] 222 / 2e-76 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Potri.010G044400 [exp] 226 / 6e-74 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Potri.008G187900 [exp] 222 / 4e-72 AT1G10740 709 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030586 [exp] 213 / 1e-71 AT1G10740 356 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10013048 [exp] 218 / 1e-70 AT1G10740 779 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10029114 [exp] 218 / 2e-70 AT1G10740 778 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10030904 [exp] 214 / 4e-69 AT1G10740 763 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10030585 [exp] 211 / 7e-68 AT1G10740 766 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G114350.1 pacid=42809027 polypeptide=Potri.016G114350.1.p locus=Potri.016G114350 ID=Potri.016G114350.1.v4.1 annot-version=v4.1 ATGGATTTGGGGTCTCTAACTAGCATATATGATAGGGCACGCGAGTTATTTTATTATTTGAAAGTTGGGCAAGTTGATTATGGAGAAGATCACAGCAAGG CTTATGGACACTCGCAATTTGGACGGACTTATGAACAAGGGCATTATCCTGAATGGGATGAGGATCACCCTATTCACTTTGTTGGGCATTCTGCTGGAGC GCAGGTTGTTCGGGTGTTGCAGCAAATGCTTGCTGATAAGGCATTTAATGGGTACGAGAACACTTCTGATAAATGGGTGTTAAGCATTACATCCCTTTCT GGAGCATTCAATGGGACTATAAGGACCTATTTAGATGGGATGCAGTGA
AA sequence Show only first row Show all	>Potri.016G114350.1 pacid=42809027 polypeptide=Potri.016G114350.1.p locus=Potri.016G114350 ID=Potri.016G114350.1.v4.1 annot-version=v4.1 MDLGSLTSIYDRARELFYYLKVGQVDYGEDHSKAYGHSQFGRTYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQMLADKAFNGYENTSDKWVLSITSLS GAFNGTIRTYLDGMQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.016G114350 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Potri.009G127400 [exp]	3.46	0.5674
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	19.44	0.5279
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	41.12	0.4943
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	115.26	0.4303
AT2G36570			Leucine-rich repeat protein ki...		Potri.003G020600 [exp]	117.89	0.4272
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	119.58	0.4603
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	176.52	0.4239
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.008G223500 [exp]	176.63	0.4243
AT1G51600	GATA	GATA28, TIFY2A,...	GATA TRANSCRIPTION FACTOR 28, ...		Potri.017G042300 [exp]	193.99	0.4141
AT1G62420			Protein of unknown function (D...		Potri.011G023301 [exp]	221.75	0.4184

Compare expression of checked genes

Potri.016G114350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.