Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 600 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 569 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 551 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 550 / 0 EFR EF-TU receptor (.1) AT3G47110 546 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 384 / 3e-119 Leucine-rich receptor-like protein kinase family protein (.1) AT5G39390 361 / 4e-116 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 307 / 1e-89 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 306 / 5e-89 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 303 / 3e-88 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102800 [exp] 679 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 678 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 667 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 667 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 666 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 664 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 660 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 656 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 654 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004827 [exp] 775 / 0 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 625 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 616 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 616 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 613 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 612 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 611 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 609 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 608 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 608 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G114400.2 pacid=42809575 polypeptide=Potri.016G114400.2.p locus=Potri.016G114400 ID=Potri.016G114400.2.v4.1 annot-version=v4.1 ATGGCAATTATTTGTCTGGTACGATTCCAACTTCAATTTTTAATATTTCTTCTATATACTACTTCTCTGTTGCTCAAAACCAGCTGCACGGGCAGTTACC CCCCAATTAATGTAGGTGTGACTCTTCCTGCCTTGGAAATATTTGCTGGGGGTGTTAACTATTTTACAGGACCCATACCTGTATCACTGTCCAATGCTTC TAGACTTCAGATTCTTGATTTTTCTATAAATGGTCTCACTGGAACTATTCCCAAAAATCTAGGAAGCTTGAAAAGTTTGGTTAGACTCAATTTTGATCTA AACAACCTAGGAAACGGGGAAGTGGATGGTTTGAATTTTCTTAGTTCTTTGGCCAACTGCACCAGCCTAGAGGTGTTAGGTCTTTCAGAAAATAATTTCG GAGGAGAATTGCATAACTCCATAGGGAACCTTTCAACCCAGTTAAAAATTTTAACTTTAGGACAGAATTTGATCCATGGAAACATCCCTGCAGAGATTGA GAACCTAGTTAACTTGAACCTCCTGGGATTGGAAGGTAACTACCTGACTGGCAGTGTTCCTGATCTTATCGGGAAGCAGAAGAAATTAGAGGGTTTGCAT TTGCATGTCAACAGATTCTCTGGATCAATCCTATCAGCCCTTGGTAACTTGACCAGATTGACTAGGCTTTTCTTGGAGGAAAACAGATTCGAAGGAAACA TACCTTCAAGTCTCGGAAACTGCAAAAGTCTGCAAAATCTGAATCTTTCGAGCAACAATCTGAACGGAACCATACCCGAAGAGGTTCTTGGTCTTTCATC TCTCTCAATTTCTTTGGTTATGTCTAATAATTCCTTGACTGGTTCCCTATCATTAAAAGTAGGTAACCTACACAATCTTGTGGAGCTGGACATATCAGGA AACAAATTGTCAGGTACAATTCCTAGTACACTCGGCAGTTGTATCAGTTTAGAACGCCTTCATTTAGAGGGGAACAAGTTTGAAGGGCCGATTCCAGAAT CTTTGGAAACTTTGAGAGGTTTGGAAGAACTAGATCTGTCAGAAAATAATTTAACTGGGAGGGTCCCTGAATTTCTTGGCGGGTTTTCAGTTCTCAGGCA TCTCAATCTTTCTCATAATAATTTAGAGGGCGAAGTGTCAAGAGATGGTATATTAGCAAATGCAAGTGCCTTCTCAGTAGTTGGAAATGATAAGCTCTGT GGTGGTATCCCAGAATTGCATTTACCTCCATGCTCCAGGAAAAACCCCAGAGAACCTCTTTCCTTCAAGGTAGTAATACCAGCAACAATTGCAGCAGTAT TCATTTCTGTTCTATTGTGCTCTCTGTCAATTTTTTGTATCAGAAGAAAGTTACCAAGGAATTCCAACACACCTACCCCTGAGGAGCAGCAAGTAGGTAT TTCATACTCGGAACTCATAAAATCAACCAATGGATTCGCTGCTGAAAACTTGATTGGTTCTGGAAGTTTTGGATCTGTATACAAAGGAATTCTTTCTGGT GAGGGAACAATTGTTGCGATTAAGATTATGAACCTTCTTCAGAAAGGTGCTTCAAAAAGTTTCATTGATGAATGTAATGCTTTAAGAAGCATAAGGCATC GTAATCTCCTGAAGATCATCACTGCTTGCTCGACCGTTGATCATCAAGGTAATGATTTCAAAGGTCTTGTTTTTGAGTTCATGTCTAATGGCAATCTAGA CCAGTGGCTACATCCAACAACTGAGCAGCAATATCGAACTAAGAAATTGAGCTTTACTCAAAGACTGAATATTGCCATCGATGTTGCTTCTGCATTGGAT TATCTCCATCACCATTGTGAAACCACAATCGTTCATTGTGATTTAAAGCCAAGCAACGTGCTCCTTGATGACGATATGACAGCCCACGTTGGTGACTTTG AATTAGCTAAATTCCTTTCTGAAGCATCCAAGAATCCCTCTATAAATCAATCAATTTCTGTAGCTTTAAAGGGTTCAATTGGCTACATCCCTCCAGAGTA TGGGATGAGAAGCGAAGTTTCTGTACTTGGAGATATTTACAGCTATGGAATACTACTGCTAGAGATGTTCACAGGAAAAAGACCTACCGATGACATGTTC GAAGGTGATCTAAATATTCACAAGTTTGCTGATATGGCTTTCCCTGGCAATGTCATGGCTATCATTGACCCATCGATGCTAGCTGAAGAAGAGATTAATG AGAATGAGGTAAATGAACATGGCATAGAAGAAAGAGCAATAATCCACAATAATGATTTTCAAGTCAACAGGACAAGCAACATTGAGGAATGCCTGGTGTC TCTTATGGAAATCGGACTCTCATGCTCTAACAAATCACCTGGGAAACGGATGGCGATGAACATAGTTGTGAATAAATTGCAAGTAATCAGAGATTCATTC TTTAGATCTATTAACAGGTTAGGTAAGAATGTTGCTTTATATTTTAAATGA
AA sequence Show only first row Show all	>Potri.016G114400.2 pacid=42809575 polypeptide=Potri.016G114400.2.p locus=Potri.016G114400 ID=Potri.016G114400.2.v4.1 annot-version=v4.1 MAIICLVRFQLQFLIFLLYTTSLLLKTSCTGSYPPINVGVTLPALEIFAGGVNYFTGPIPVSLSNASRLQILDFSINGLTGTIPKNLGSLKSLVRLNFDL NNLGNGEVDGLNFLSSLANCTSLEVLGLSENNFGGELHNSIGNLSTQLKILTLGQNLIHGNIPAEIENLVNLNLLGLEGNYLTGSVPDLIGKQKKLEGLH LHVNRFSGSILSALGNLTRLTRLFLEENRFEGNIPSSLGNCKSLQNLNLSSNNLNGTIPEEVLGLSSLSISLVMSNNSLTGSLSLKVGNLHNLVELDISG NKLSGTIPSTLGSCISLERLHLEGNKFEGPIPESLETLRGLEELDLSENNLTGRVPEFLGGFSVLRHLNLSHNNLEGEVSRDGILANASAFSVVGNDKLC GGIPELHLPPCSRKNPREPLSFKVVIPATIAAVFISVLLCSLSIFCIRRKLPRNSNTPTPEEQQVGISYSELIKSTNGFAAENLIGSGSFGSVYKGILSG EGTIVAIKIMNLLQKGASKSFIDECNALRSIRHRNLLKIITACSTVDHQGNDFKGLVFEFMSNGNLDQWLHPTTEQQYRTKKLSFTQRLNIAIDVASALD YLHHHCETTIVHCDLKPSNVLLDDDMTAHVGDFELAKFLSEASKNPSINQSISVALKGSIGYIPPEYGMRSEVSVLGDIYSYGILLLEMFTGKRPTDDMF EGDLNIHKFADMAFPGNVMAIIDPSMLAEEEINENEVNEHGIEERAIIHNNDFQVNRTSNIEECLVSLMEIGLSCSNKSPGKRMAMNIVVNKLQVIRDSF FRSINRLGKNVALYFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	0	1
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	1.73	0.8315
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	6.24	0.8161
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	15.49	0.7980	PHYC.1,phya
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	16.43	0.7948
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	17.54	0.7894
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.008G155700 [exp]	19.44	0.7746
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Potri.011G143000 [exp]	19.77	0.7691
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Potri.011G043500 [exp]	20.00	0.7217
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	21.16	0.7577
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.008G213000 [exp]	21.90	0.7722

Compare expression of checked genes

Potri.016G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.