Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 171 / 1e-48 Carbohydrate-binding-like fold (.1.2) AT5G26570 50 / 3e-06 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099200 [exp] 669 / 0 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 176 / 4e-50 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.002G234500 [exp] 48 / 2e-05 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 45 / 0.0002 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G170300 [exp] 44 / 0.0003 AT2G04270 1009 / 0.0 RNAse E/G-like (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004826 [exp] 192 / 7e-55 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10035528 [exp] 192 / 6e-53 AT2G40070 280 / 4e-83 unknown protein Lus10002495 [exp] 186 / 1e-52 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10027767 [exp] 180 / 8e-49 AT2G40070 288 / 5e-86 unknown protein Lus10018226 [exp] 139 / 3e-36 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10037434 [exp] 50 / 3e-06 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10041275 [exp] 50 / 4e-06 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G114500.2 pacid=42809925 polypeptide=Potri.016G114500.2.p locus=Potri.016G114500 ID=Potri.016G114500.2.v4.1 annot-version=v4.1 ATGAAAACCCTAACAAGTTCTTGTTCAAACGTCATCCTTGACAAAAAAGGAGACAACAGACCCGTTTTCTCTTTCAGAGAATTGAGACATGAAGTTAGTA TTTTGCCATCAAAGAAGCTTGTTCATAGTGTTGGCTTCTTGCATTGGCTATGTGTGAAACATAAGCCTATCTGTCCAATTCGTGTTTCTTCTTCTTTCTC ACCTGAGTCCCAGGTAGACTTGGAGGCTGAAGATGCTCAAAACCAAGAAACAAATGATTCAAAGACAGTTCATGTCAAATTCCAGCTACGGAAGGAGTGC TCCTTTGGAGAACAATTTACCATAGTAGGAGATGATCCTTTGTTGGGATTATGGGATCCTGAAAGTGGAATACCATTGAACTGGTCAGATGGGCATCTTT GGACTGTTGAGATGGATATACCAGTTGGAAAATCCATCCAGTTCAAGTTCATACTAAAAGGAATTGCTGAGAAGATTTTCTGGCAACCGGGTCCTGATCG AATTCTCCCAACGTGGGAAACCAGTAATACCATCGTAGTTTGGGAAGATTGGGAAGATGCTGCATTGCAGAAGATAACAGAGGAAGAACCATCTGCTAAT GGGAGTGAGGAACCTGTTGTCAACCCAGAATCGCTGATTGTTGCCGAGAACTTGACTTGTCAAAAGGAAGAGGTGGTTTCTGATATGAGCAATGGAGCAG TTACCGTGGATGTGAGTTCTAACCCAGAAAAGAAACCATCGCCAGTGACTTGCAAGAAAGCAATTGTTGCTGATAACATTTATCCTGTGCAAGAGAAACC TCTAGCTATTGTAGCAGATAACATCAGTGACTCAGAGGGGGCTTCTACTGTGGATGTGAATGTTAGCAATGCAGTATTAAGTGAAAAGAGAACCAGTCAC CAGGAGGAAGAACAGAGAACTACATCAAGCAAGAGTACAGTGGTTAGAGAGGATGTTGTCAGAAATGATGATGCTCCAACAGCCATAAACTCAGCAAACT CTGATGTCCAAGGAAGTCTGGTTACTTGTGGAGGAGATGCTGTTCTGGTTACTGGCTTGTCTGCAGCAACAGGGATACCAAGTGAAGCAGCTATTGACAG TGAAGAAAGATGCCATGCCTTTGATGCCTCTGTTGGAGCTGGTGAAAAGAATCACAATTTGCCAGAGTTAGATGAGAAGCGTGAAGTCGGTGATGAACCA CTTCAAGGAGAAACAATGGATGGGTTCAACGATGAGGAGCCGCAGGGCAACGAGATCATACACAAACCACTGGTGAAAGAAGTAAAGTGTGATGTTGATG ACAATCCACATCGAGAAGAATCAATCAAAGGGCTCGATGATGAGGAGCAGCACAGCCATGAACTCGTATATAAGCCACGGGCCAAAGAAGAAAAGAAGCA AGAGTTTGTAAGAAACTGTGTTGTTCAAAATGACCTGCACTGGATACAGAAGCTGCTAACCAGTTTAGGGTTGCTGTAG
AA sequence Show only first row Show all	>Potri.016G114500.2 pacid=42809925 polypeptide=Potri.016G114500.2.p locus=Potri.016G114500 ID=Potri.016G114500.2.v4.1 annot-version=v4.1 MKTLTSSCSNVILDKKGDNRPVFSFRELRHEVSILPSKKLVHSVGFLHWLCVKHKPICPIRVSSSFSPESQVDLEAEDAQNQETNDSKTVHVKFQLRKEC SFGEQFTIVGDDPLLGLWDPESGIPLNWSDGHLWTVEMDIPVGKSIQFKFILKGIAEKIFWQPGPDRILPTWETSNTIVVWEDWEDAALQKITEEEPSAN GSEEPVVNPESLIVAENLTCQKEEVVSDMSNGAVTVDVSSNPEKKPSPVTCKKAIVADNIYPVQEKPLAIVADNISDSEGASTVDVNVSNAVLSEKRTSH QEEEQRTTSSKSTVVREDVVRNDDAPTAINSANSDVQGSLVTCGGDAVLVTGLSAATGIPSEAAIDSEERCHAFDASVGAGEKNHNLPELDEKREVGDEP LQGETMDGFNDEEPQGNEIIHKPLVKEVKCDVDDNPHREESIKGLDDEEQHSHELVYKPRAKEEKKQEFVRNCVVQNDLHWIQKLLTSLGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01260			Carbohydrate-binding-like fold...		Potri.016G114500 [exp]	0	1
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	2.00	0.7226
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	3.87	0.6980	ARP8.2,ARP908
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	6.32	0.7155
AT2G02410			unknown protein		Potri.003G046600 [exp]	8.30	0.7108
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Potri.003G018800 [exp]	11.66	0.6893	Pt-AKT2.1
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G368000 [exp]	14.96	0.7035
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	19.41	0.6852
AT1G66330			senescence-associated family p...		Potri.017G129100 [exp]	20.12	0.6889
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.016G006100 [exp]	28.91	0.6399
AT1G11440			unknown protein		Potri.011G032700 [exp]	33.67	0.6776

Compare expression of checked genes

Potri.016G114500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.