Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01270 922 / 0 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) AT4G21670 598 / 0 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1) AT5G54210 42 / 0.001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049400 [exp] 681 / 0 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.004G040000 [exp] 680 / 0 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.006G099302 [exp] 635 / 0 AT5G01270 363 / 6e-119 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099402 [exp] 355 / 5e-118 AT5G01270 294 / 2e-95 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027766 [exp] 1020 / 0 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10018479 [exp] 648 / 0 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10011195 [exp] 632 / 0 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.016G114600.2 pacid=42810469 polypeptide=Potri.016G114600.2.p locus=Potri.016G114600 ID=Potri.016G114600.2.v4.1 annot-version=v4.1 ATGAGTCCTTTAGGGTTTAAATCCCTGGTTTATCACGGAGAGGTATGTTTGGGAGAACTGGATGTTATTCCGGTGACGGAAAAGGGTTTCTTGTTCCCAA ACAACGAGATTCGCATCCATCATATCTCTCAACAAAGTGAGCGATGTCCTCCTCTGTCAATTCTCCAAACAATCTCTCCATTTTCCGTCCGTTGCAAGCT CGAATCGTCTTCTCCTATGGAACAGTCTCATTTGATCAATCTCCATGCCTCTTGCTTCCACGAAGTCAAGACGGCGGTGGTTTTGATTGGAGATGAAGAG ATTCATTTAGTGGCAATGCCAAGCAAGCAAAAGAAGTTTCCATGTTTTTGGTGCTTTGCGGTTCCTGTAGGTCTGTACGATTCGTGTTTACGGATGCTCA ACATGCGGTGTCTTTCTATTGTGTTTGATCTTGATGAGACACTTATTGTTGCGAACACGATGAAGTTGTTTGAGGATAGGATTGAGACTCTTAGGGGTTG GATTGGACGGGAGCAAGATCCGATGAGGGTATCTGGAATGATTGCGGAGATGAAGAGGTATATTGATGATCGGTTGCTTCTGAAGCAGTATATAGAGAAT GATGTTGTTATGGATAATGGAAAGATGTACAAGGTTCAACTGGAGGACGTTTTGCGATCATCGGATGGCCATGAGAGAGTTGTTAGACCTGTGATTAGAT TGCCAGAGAAAAATATTGTTCTAACTCGCATCAATCCAGAGATTCGTGATACGAGTGTGCTTGTGAGATTAAGGCCGGCATGGGAAGATTTGAGAAGTTA CTTAACAGCAAAGGGACGCAAACGGTTTGAAGTTTATGTTTGTACGATGGCTGAAAGAGATTATGCCTTAGAAATGTGGAGGCTTCTTGACCCAGAGGCT CACTTGATAGCTTCAAAGCAACTCTCAGACCGTGTAGTTTGTGTTAAATCAGGCTCCAAGAAATCTTTATTGAATGTCTTCCAAGATGGCATGTGCCATC CAAAAATGGCAATGGTAATAGATGACCGGTTAAAAGTCTGGGAAGACATGGATCAACCTCGAGTTCATGTAGTTCCTGCATTCACTCCTTATTATGCTCC TCTAGCAGAGACAGCGAACGCCGTTCCAGTCCTATGTGTGGCAAGAAATGTTGCATGCAATGTCAGAGGTTGTTTTTTCAAAGAGTTTGATGAGATCTTA ATACGAAGAATATCTGAAGTCTTTTATGAAGATGAGGTGAAAAGCTTACCTCCTACTCCTGATGTGAGCAACTACATGATGACAGAGGATAGTGGTTTTG TACCCAATGGCAATAACATTGCTCCTTTTAGTGAAGGAATGAGTGGCATTGAAGCTGAACGAAGATTGCATCAATCGGATGGCAAGACTGTCATGGAATC AGCCCCACATTCTATTACAAATAGTGCTGAATTGAGAACTGAAATCTCCCAGCCAAACGTGGCAATAATTCCAAATGTTGCTGGACCAACCTTATCGGCC ACACTCTTGCCTTCTCAGAAACCTAGTTTACTTGGTGCTCCTGTTAGACGAGATTTAAGGAATCAAAATTCTGGTCAACCCCCTCTTCTTTCTAGAATAC CTGCAGCAATACCATTATCCTCTCTACAGCCACAGGGAGGCTGGCTGGTGGAAGAAGATACTAGCAGAGCACAATCAAATAACCGACCTTCAGCAACTGC TCAAGAATTGGATTCTTTAAAATCTGATAAGCTGAGAGGACTGCAGAATCCACTTGCTCATGGTGCATCAGCCTCTGCTCCCGCTCCCTCCAGTTTAGTC TCACATGCTTCAGAATTGAAGGCTGAAGAGGCAATTGCTGGAAATGACATGCATCAACAAATTGTTCCTGCTGGAGAGGCTGGCATGTCTCAGAATCATG TGTCCTCTAGTAGCAGAGAGTTCCAAGCTGAAGCTGGGAAACTCAATCTGCTACCATCCCACTTGTCTATTGGAGTGCTGCAAGAAATTGGACGGAGATG CAGATCCAAGGTGGAGTTCAAATCTGTTGTAAGCACCAGTAAGGATTTGCAATTCTCTGTCGAGGTTTTGTTCACCGGTGAAAAGATAGGTGTTGGAATG GGTAAAACACGGAAGGATGCACAACAGCAAGCAGCTGAGAATGCACTTCGCAGCTTGGCAGAAAAATATGCAGCATATGTTTCACCCAATTCTGGTGCTG TGGATGGTGATTTCGATAAGCTTTCTATTGGGAACGAGAATGGATTTGTATGGGACATTAGCAGTCCTGAATCAAGTGATCTGGTACGAGAAGATGGTTC AGCTAAAGAACGTCCTTCTGAGGTTGCTGACGCTGAACTTGTGAATACATCCAATATGGTAAATCAGCAACAGCAGAAACGTGCCAACTCCCCTAGATCG CCACAATCTATACCAAGTAAACGGTCAAAAGAAGAACTGTGTGGTTCACAAAGTCTACCCTTTCGGCAATCCAAGAATGAGAGTCACGTTTGA
AA sequence Show only first row Show all	>Potri.016G114600.2 pacid=42810469 polypeptide=Potri.016G114600.2.p locus=Potri.016G114600 ID=Potri.016G114600.2.v4.1 annot-version=v4.1 MSPLGFKSLVYHGEVCLGELDVIPVTEKGFLFPNNEIRIHHISQQSERCPPLSILQTISPFSVRCKLESSSPMEQSHLINLHASCFHEVKTAVVLIGDEE IHLVAMPSKQKKFPCFWCFAVPVGLYDSCLRMLNMRCLSIVFDLDETLIVANTMKLFEDRIETLRGWIGREQDPMRVSGMIAEMKRYIDDRLLLKQYIEN DVVMDNGKMYKVQLEDVLRSSDGHERVVRPVIRLPEKNIVLTRINPEIRDTSVLVRLRPAWEDLRSYLTAKGRKRFEVYVCTMAERDYALEMWRLLDPEA HLIASKQLSDRVVCVKSGSKKSLLNVFQDGMCHPKMAMVIDDRLKVWEDMDQPRVHVVPAFTPYYAPLAETANAVPVLCVARNVACNVRGCFFKEFDEIL IRRISEVFYEDEVKSLPPTPDVSNYMMTEDSGFVPNGNNIAPFSEGMSGIEAERRLHQSDGKTVMESAPHSITNSAELRTEISQPNVAIIPNVAGPTLSA TLLPSQKPSLLGAPVRRDLRNQNSGQPPLLSRIPAAIPLSSLQPQGGWLVEEDTSRAQSNNRPSATAQELDSLKSDKLRGLQNPLAHGASASAPAPSSLV SHASELKAEEAIAGNDMHQQIVPAGEAGMSQNHVSSSSREFQAEAGKLNLLPSHLSIGVLQEIGRRCRSKVEFKSVVSTSKDLQFSVEVLFTGEKIGVGM GKTRKDAQQQAAENALRSLAEKYAAYVSPNSGAVDGDFDKLSIGNENGFVWDISSPESSDLVREDGSAKERPSEVADAELVNTSNMVNQQQQKRANSPRS PQSIPSKRSKEELCGSQSLPFRQSKNESHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.016G114600 [exp]	0	1
AT1G68580			agenet domain-containing prote...		Potri.008G119400 [exp]	1.41	0.7311
AT5G15640			Mitochondrial substrate carrie...		Potri.004G117000 [exp]	8.48	0.6696
					Potri.008G129650 [exp]	12.64	0.6345
					Potri.009G005300 [exp]	16.37	0.7244
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	17.88	0.6789
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G190200 [exp]	19.59	0.6174
AT2G28540			RNA binding (RRM/RBD/RNP motif...		Potri.016G084700 [exp]	23.43	0.6690
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	25.45	0.7036
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	27.34	0.6499
AT5G40100			Disease resistance protein (TI...		Potri.006G283700 [exp]	31.43	0.6387

Compare expression of checked genes

Potri.016G114600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.