Plant FIBer expression Database

Potri.016G114700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40060 216 / 3e-70 CLC2 clathrin light chain 2, Clathrin light chain protein (.1)
AT3G51890 195 / 9e-62 Clathrin light chain protein (.1)
AT2G20760 186 / 3e-57 Clathrin light chain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G190400
[exp]
215 / 8e-70 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1)
Potri.008G066800
[exp]
215 / 1e-69 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1)
Potri.011G049500
[exp]
189 / 1e-58 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1)
Potri.019G102000
[exp]
184 / 5e-56 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1)
Potri.004G040100
[exp]
182 / 1e-55 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004389
[exp]
194 / 3e-61 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1)
Lus10018480
[exp]
193 / 4e-60 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1)
Lus10011194
[exp]
191 / 2e-59 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1)
Lus10040187
[exp]
185 / 9e-58 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1)
Lus10030401
[exp]
171 / 2e-52 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1)
Lus10018582
[exp]
158 / 2e-46 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1)
Lus10039815
[exp]
147 / 2e-42 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1)
Lus10037839
[exp]
134 / 1e-37 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01086 Clathrin_lg_ch Clathrin light chain
Representative CDS sequence
>Potri.016G114700.2 pacid=42809637 polypeptide=Potri.016G114700.2.p locus=Potri.016G114700 ID=Potri.016G114700.2.v4.1 annot-version=v4.1
ATGTCATCGTTCACCGACGAGTCTCCTAGAGAATACAGCGGTTCTTTTAGAAACTTTGATGCCAACTCGCTGACCGGTAACTCGTCACCGGTCTTCGCTT
CTCAGTCATACAGCACCACAGGAGATGACTTGTTCTCCTCGCAGCCGGTGAGCGATGACGGCGGGTTCTCCCCGGAGCAGAACGGGATATCGGATGGACC
GATCTTGCCTCCTCCGTCGGAGATGGAGTCCGAGGAAGGTTTCGCTTTAAGAGAGTGGCGTAGAGAGAATGCTATAAGACTGGAAGAGAAGGAGAAGAAG
GAGAAGGAGATGTTGAAGCAAATAGTAGAGGAAGCTGAAGAGTATAAAAAAGAGTTTTACAGGAAGAGACAGCTGACTCTAGAGAACAACAAGGCTGCTA
ATAGAGAAAAGGAGAAGTTATTTTTGGCAAACCGGGAGAAGTTCCATGCCGAAGCTGGAAAGAATTATTGGAAGGCAACTGCAGAACTCATTCCTCGCGA
GGTGCCAACAATGGAGAAAAGGGGGAAGAAGGATGAGAAGAAGCAGCCCACCATTGTGGTGATCCAGGGACCGAAGCCTGGCAAGCCTACTGACCTATCA
AGGATGCGTCATATACTTCTCAACCTTAAACACAATCCACCTCCCCACATGAAGCCCAAGCCTCCATCACCAGCAGAACCTAAAAAAGATGCCAAGAGTG
GTCCTGCTGTTGCCGCCCCTAGTACAGCCTCCACAAAGACTGCCGCCGCAACTCCTGAGGCAGTAGCTGCTGCTTGA
AA sequence
>Potri.016G114700.2 pacid=42809637 polypeptide=Potri.016G114700.2.p locus=Potri.016G114700 ID=Potri.016G114700.2.v4.1 annot-version=v4.1
MSSFTDESPREYSGSFRNFDANSLTGNSSPVFASQSYSTTGDDLFSSQPVSDDGGFSPEQNGISDGPILPPPSEMESEEGFALREWRRENAIRLEEKEKK
EKEMLKQIVEEAEEYKKEFYRKRQLTLENNKAANREKEKLFLANREKFHAEAGKNYWKATAELIPREVPTMEKRGKKDEKKQPTIVVIQGPKPGKPTDLS
RMRHILLNLKHNPPPHMKPKPPSPAEPKKDAKSGPAVAAPSTASTKTAAATPEAVAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40060 CLC2 clathrin light chain 2, Clathr... Potri.016G114700
[exp]
0 1
AT1G22220 AUF2 auxin up-regulated f-box prote... Potri.003G203000
[exp]
1.41 0.8662
AT5G41960 unknown protein Potri.003G146100
[exp]
4.58 0.8609
AT4G15030 unknown protein Potri.001G266200
[exp]
6.00 0.8312
AT5G05710 Pleckstrin homology (PH) domai... Potri.010G190500
[exp]
15.74 0.8632
AT2G45630 D-isomer specific 2-hydroxyaci... Potri.014G073400
[exp]
16.49 0.8288
AT1G64950 CYP89A5 "cytochrome P450, family 89, s... Potri.007G087950
[exp]
17.54 0.8301
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Potri.011G078300
[exp]
20.85 0.8343
AT1G62600 Flavin-binding monooxygenase f... Potri.001G121100
[exp]
22.80 0.8144
AT3G61860 ATRSP31, At-RS3... arginine/serine-rich splicing ... Potri.014G101800
[exp]
28.63 0.7514 Pt-RSP31.1
AT1G57790 F-box family protein (.1) Potri.006G212600
[exp]
32.46 0.8155

Potri.016G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.