Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 486 / 2e-172 Protein kinase superfamily protein (.1) AT1G16670 338 / 5e-114 Protein kinase superfamily protein (.1) AT1G56145 312 / 1e-97 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 306 / 1e-95 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 305 / 6e-95 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 304 / 1e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 303 / 2e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 301 / 2e-93 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 301 / 3e-93 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 298 / 1e-92 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040200 [exp] 417 / 1e-145 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 412 / 2e-143 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 340 / 1e-114 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 338 / 7e-114 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 321 / 2e-107 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G082900 [exp] 338 / 3e-107 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G393200 [exp] 318 / 2e-105 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 315 / 3e-105 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.003G148000 [exp] 328 / 3e-103 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004825 [exp] 514 / 0 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 449 / 3e-157 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10011193 [exp] 402 / 1e-139 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 400 / 2e-137 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10001212 [exp] 364 / 5e-121 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10042460 [exp] 332 / 9e-112 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 332 / 2e-111 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10026207 [exp] 328 / 6e-110 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042851 [exp] 328 / 9e-110 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10023510 [exp] 310 / 2e-102 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G114800.4 pacid=42809979 polypeptide=Potri.016G114800.4.p locus=Potri.016G114800 ID=Potri.016G114800.4.v4.1 annot-version=v4.1 ATGAGCTGTAGCTGCTTTGGTAGATCAAATTGGTTTAAAGGAAATAATCATAATGATACTCCGGGACAAACAAACGCTCAAGTGATTGCCACCGACAATG TAAATCTCTTCTCGTATAATTCGCTGAGATCAGCAACAAGGAATTTTCATCCATCAAATAGAATCGGTGGAGGTGGTTTCGGAGTCGTTTATAAGGGAGT TTTAAGAGATGGTACTCCTGTGGCCATCAAGTGTCTTTCTGCAGAATCTAAACAAGGAACAGATGAGTTTGTGACGGAGATTAGAATGATATCAACTATA AAGCATCCAACCCTTGTTGAACTAGTTGGCTGCTGTGTTGAGGAAAATAATCGAATATTGGTATATGAATATATGGAAAACAACAGCATTTCTACCGCTT TACTTGGTTCAAAAGGAAAACATGTTGCTATGGACTGGCCTACAAGAGCTGCTATTTGCATAGGTACAGCGAGTGGTCTTGCATTTCTTCATGAGGAAGC CAAACCACATATCGTCCATAGGGACATTAAGGCCAGTAATGTTCTTCTGGATGGAAACTTACGGCCTAAAATAGGGGATTTTGGGCTGGCAAAATTATTT CCAGACAATGTCACACATCTTAGTACTCGAGTGGCAGGAACAATGGGATATCTCGCCCCAGAGTATGCCCTCTTAGGACAACTTACAAAGAAGGCTGATG TATACAGTTTCGGGGTGCTCATACTTGAAATAATTAGTGGGAGAAGTAGCAGCAAGGCAGCATTTGGGGAGGATCTTCTGGTTTTAGTTGAATGGGCATG GAAACTATGGAAAGAAGAGAGACTTCTGGATATTGTTGATCCAGAAATGACTGGATATCCAGAAAATGAGGCGATGCGCTTCATGAAGGTTGCACTTTTC TGTACCCAGGCAGTTGCAAACCAAAGACCCAACATGAAGCAAGTAGTGAAGATGCTCTCCAAAGATGTAAATCTTAACGAGAAAGCACTTACAGAGCCAG GGATATACAAAGCTCAAACCTCTAAGCACTTCGGTGGTGGTAGTTCATATGAGACATCATCTTCTCATAAAAACAAAGGCAAGCAATCACTAAACACTTC TGTAAACTCGGCCATCTTAGGTAGTGCTGACAGTATGACCCAGATGCTTCCCAGGTGA
AA sequence Show only first row Show all	>Potri.016G114800.4 pacid=42809979 polypeptide=Potri.016G114800.4.p locus=Potri.016G114800 ID=Potri.016G114800.4.v4.1 annot-version=v4.1 MSCSCFGRSNWFKGNNHNDTPGQTNAQVIATDNVNLFSYNSLRSATRNFHPSNRIGGGGFGVVYKGVLRDGTPVAIKCLSAESKQGTDEFVTEIRMISTI KHPTLVELVGCCVEENNRILVYEYMENNSISTALLGSKGKHVAMDWPTRAAICIGTASGLAFLHEEAKPHIVHRDIKASNVLLDGNLRPKIGDFGLAKLF PDNVTHLSTRVAGTMGYLAPEYALLGQLTKKADVYSFGVLILEIISGRSSSKAAFGEDLLVLVEWAWKLWKEERLLDIVDPEMTGYPENEAMRFMKVALF CTQAVANQRPNMKQVVKMLSKDVNLNEKALTEPGIYKAQTSKHFGGGSSYETSSSHKNKGKQSLNTSVNSAILGSADSMTQMLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09010			Protein kinase superfamily pro...		Potri.016G114800 [exp]	0	1
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	6.63	0.7590
AT5G48385			FRIGIDA-like protein (.1)		Potri.002G239900 [exp]	15.29	0.7227
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	46.13	0.6923
AT2G03810			18S pre-ribosomal assembly pro...		Potri.010G138100 [exp]	65.31	0.6992
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Potri.005G083600 [exp]	69.05	0.7009
AT3G52240			unknown protein		Potri.008G025000 [exp]	94.23	0.6575
AT1G51580			RNA-binding KH domain-containi...		Potri.010G251700 [exp]	161.20	0.6494
AT3G48810			Pentatricopeptide repeat (PPR)...		Potri.008G102100 [exp]	169.24	0.6537
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	177.24	0.6518	Pt-MEKK1.2
AT4G30240			Syntaxin/t-SNARE family protei...		Potri.015G078400 [exp]	223.99	0.6331

Compare expression of checked genes

Potri.016G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.