Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 352 / 4e-114 unknown protein AT3G09000 150 / 7e-39 proline-rich family protein (.1) AT2G38160 92 / 4e-20 unknown protein AT1G27850 95 / 6e-20 unknown protein AT5G01280 67 / 1e-11 unknown protein AT3G08670 57 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 449 / 2e-152 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 399 / 1e-132 AT2G40070 321 / 1e-102 unknown protein Potri.010G177000 [exp] 96 / 3e-21 AT2G40070 82 / 9e-17 unknown protein Potri.010G056200 [exp] 92 / 5e-19 AT1G27850 240 / 1e-64 unknown protein Potri.008G178600 [exp] 64 / 2e-10 AT1G27850 567 / 0.0 unknown protein Potri.006G110700 [exp] 49 / 7e-06 AT3G08670 251 / 1e-75 unknown protein Potri.016G139500 [exp] 49 / 9e-06 AT3G08670 245 / 2e-73 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030402 [exp] 338 / 2e-108 AT2G40070 561 / 0.0 unknown protein Lus10040188 [exp] 330 / 5e-106 AT2G40070 533 / 0.0 unknown protein Lus10004824 [exp] 322 / 7e-104 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10002493 [exp] 321 / 8e-104 AT2G40070 300 / 2e-95 unknown protein Lus10037838 [exp] 306 / 2e-96 AT2G40070 551 / 0.0 unknown protein Lus10027767 [exp] 244 / 1e-70 AT2G40070 288 / 5e-86 unknown protein Lus10004390 [exp] 222 / 4e-68 AT2G40070 321 / 5e-107 unknown protein Lus10035528 [exp] 167 / 1e-43 AT2G40070 280 / 4e-83 unknown protein Lus10011374 [exp] 84 / 2e-16 AT2G40070 151 / 8e-37 unknown protein Lus10021382 [exp] 82 / 4e-16 AT3G08670 432 / 4e-145 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G114900.1 pacid=42808956 polypeptide=Potri.016G114900.1.p locus=Potri.016G114900 ID=Potri.016G114900.1.v4.1 annot-version=v4.1 ATGGTGATGAAAGAGAAGGATGAAGAGCTTACCCTGTTTCTGGAGATGCGAAGACGCGAGATAGAGAGGGAGAAAAACAATCTTCTCCTTAACAGTTCGG CCGATGAACCTCAAGCTCCTTTAGGATTAGGTAGTAATAATCTTTCACTGGTGTCTAATAAGATTACGGTGTCGTCTATTGTACCGCCGCCGCGAAAGAC TGCTACGGAGAAGTTCTTGGATTCGGAGAATGATAAATCTGACTATGATTGGCTTCTTACACCACCTAGAACCCCGCTTTTTACTTCCTTGGAGTTGGAA TCGCAGAAAACTGCAATGAGTCAGATTGGGATGTCTAATGCTCGTCCCACTGCTCTAAAGTCAAGGCTAATAAATATCCAGGAAGAACCTGCTTCAAGGA CTCATGTAGGATCTAAGGGAACAACTTTGCAGTCAGGACTGAACTCCACAAGTGCTGGTAATAGGAGGTCCGCATCAGCTGGAGGACAAAGATCTGTGTC GAGACCTGCAACACCCACAGGACGGCCCTCTTTATCTGCAACAGCTAAGCATTCAAGACCGTCTACACCCACATCACGGCCCACATTGTCTTCTACTAAG TCTGTTGCTCCTCCAGCGAGATCCTCAACTCCTACTAGAATTGCTGCACGCTCTTCGACGCCAACTGCTAGACCATCTCTTTCAGGTTCAAAGCCAGCTT CCAGATCAGCAACACCAATCCGCCAGTCATCAACCCCTTCAAGTCCACCTAGTGTGGCTGCTGCTCCTGGCCAGACTTCTTCAGTGACCAAGTCAGTTCC TGCCACTCTGAAAAATCCAGTGGCATCACGTGGCATTTCTCCAACAGTAAAATCTAGGCCTTGGAAACCTGAAGAGATTCCTGGTTTCTCTCTTGATGCT CCACCAAATTTAAGGACATCATTGCCAGAAAGACCAGCTTCAGCCACTAGGGATAGGCCTGGAGGTCCAAGTGCTCGGCCAGCTTCGGCCTCAAGGGATA GGCCTGGAGGTCCAAGTGCTCGGCCAGCTTCGGCCTCTAGGGAGAGGCCTGGAGGTCCAAGTGCTCGCCCAGCTTCGGCCTCAAGGGAGAGGCCAGGTGA TCCAAGTGCTCGCCCAGCTTCAGCTTCCAGGGGTAGGCCTGGAGGTCCAAGTGCTCGATCATCTTCTAGTGATGCTGGTTTTAATGGAAGACCGAGGCAA CAATCATGCTCCCCCTCTCGAGGAAAGGCCAGTCGGATGTCCATTCCCACAAAGAGCAGAACACAGACCAATGGTGGTGATGATGTGAACCCAGTGCAAA TGGGAACAAAGATGGTTGAAAGAGTGGTGAACATGAGAAAACTGGTACCACCAAAGCAAGATGGCTCTCACTCCAGCCTCAGTAATTCTGCTGGGAAGTC ATCCTCCCTTGATAGCACAGGCTTTGGAAGAACTCTCTCAAAGAAATCTCTGGATATGGCTTTGAGGCATATGGATATAAGGCGAAGCATTTCAGGTAAT TTACGCCCCCTTATGACCAACATCCCTGCTTCCTCTATGTACAGTGTCAGATCAGGAGGATCTTCAAAAGGCAGGACAGTTAGTGTTTTGGACTCCCCTC TGGCCACAAGCAGCAATGCTAGCTCTGAACCAAGTGTCAACAATAACTCCTATTTTGCTGATGGGATAGAAATAGAAGACAACGAATTTGGAAGCGAGAG AGGAAATTCCTCTCCTTCAAGTCATCATGGCAGGTGA
AA sequence Show only first row Show all	>Potri.016G114900.1 pacid=42808956 polypeptide=Potri.016G114900.1.p locus=Potri.016G114900 ID=Potri.016G114900.1.v4.1 annot-version=v4.1 MVMKEKDEELTLFLEMRRREIEREKNNLLLNSSADEPQAPLGLGSNNLSLVSNKITVSSIVPPPRKTATEKFLDSENDKSDYDWLLTPPRTPLFTSLELE SQKTAMSQIGMSNARPTALKSRLINIQEEPASRTHVGSKGTTLQSGLNSTSAGNRRSASAGGQRSVSRPATPTGRPSLSATAKHSRPSTPTSRPTLSSTK SVAPPARSSTPTRIAARSSTPTARPSLSGSKPASRSATPIRQSSTPSSPPSVAAAPGQTSSVTKSVPATLKNPVASRGISPTVKSRPWKPEEIPGFSLDA PPNLRTSLPERPASATRDRPGGPSARPASASRDRPGGPSARPASASRERPGGPSARPASASRERPGDPSARPASASRGRPGGPSARSSSSDAGFNGRPRQ QSCSPSRGKASRMSIPTKSRTQTNGGDDVNPVQMGTKMVERVVNMRKLVPPKQDGSHSSLSNSAGKSSSLDSTGFGRTLSKKSLDMALRHMDIRRSISGN LRPLMTNIPASSMYSVRSGGSSKGRTVSVLDSPLATSSNASSEPSVNNNSYFADGIEIEDNEFGSERGNSSPSSHHGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40070			unknown protein		Potri.016G114900 [exp]	0	1
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	8.66	0.7710
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229325 [exp]	13.74	0.7946
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	14.00	0.7784	Pt-MYB.42,MYB181
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	17.74	0.7398
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	18.02	0.7238	B5.2
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Potri.006G005700 [exp]	23.74	0.7441
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.003G182000 [exp]	27.65	0.7471
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Potri.001G222600 [exp]	36.66	0.6973	Pt-CIPK3.1
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	37.81	0.7460
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.015G022000 [exp]	42.33	0.7681	MYB179

Compare expression of checked genes

Potri.016G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.