Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01500 517 / 0 TAAC thylakoid ATP/ADP carrier (.1) AT3G51870 498 / 3e-177 Mitochondrial substrate carrier family protein (.1) AT4G01100 145 / 7e-40 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G32400 140 / 9e-38 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT2G37890 138 / 2e-37 Mitochondrial substrate carrier family protein (.1) AT3G53940 138 / 3e-37 Mitochondrial substrate carrier family protein (.1) AT4G26180 136 / 8e-37 Mitochondrial substrate carrier family protein (.1) AT1G14560 133 / 9e-36 Mitochondrial substrate carrier family protein (.1) AT3G55640 131 / 5e-35 Mitochondrial substrate carrier family protein (.1) AT5G07320 122 / 1e-30 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099800 [exp] 674 / 0 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.001G094100 [exp] 148 / 4e-41 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 148 / 5e-41 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 147 / 1e-40 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G091900 [exp] 147 / 1e-40 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 147 / 1e-40 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 146 / 2e-40 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 144 / 9e-40 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 142 / 2e-38 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035509 [exp] 497 / 2e-176 AT3G51870 504 / 3e-179 Mitochondrial substrate carrier family protein (.1) Lus10004820 [exp] 474 / 1e-167 AT3G51870 462 / 5e-163 Mitochondrial substrate carrier family protein (.1) Lus10027789 [exp] 452 / 3e-159 AT3G51870 462 / 8e-164 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 149 / 3e-41 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 148 / 3e-41 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 147 / 1e-40 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 145 / 3e-40 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 146 / 4e-40 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 146 / 4e-40 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 145 / 7e-40 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.016G115400.2 pacid=42809471 polypeptide=Potri.016G115400.2.p locus=Potri.016G115400 ID=Potri.016G115400.2.v4.1 annot-version=v4.1 ATGAGAGACAAAGAGAGGGCCATTCTCTGCTTCCAGACGTTACCAAACCTAAAAACCACACACTGCTCTCTCACGGAAACCACGCACCACCGCGAACCTC TGTGGAGAAACGCGCAATTCAGTTGCAGAATCCGGAGTGATGGAAGCAATGGCAGTTTTGGTAATTTTGCTTCAGTTTCAATGGCAGAGAATAAGAAAGA TAAAGGAAATGAGTTCGCGCCGAGTACGGCTCAGCTATTGAAGCATCCGTTAGCAATACTGGCTTTTTTCCCGAGAGATGCTGCGATTTTTGCCGCTGGA GCTGTCGCTGGTGCCGCCGCGAAGACCGTCACCGCTCCGCTTGACCGTATTAAGCTACTCATGCAGATTCATGGAGTGCGGGCCGGGCAGGAAAGTGCTA AGAAGGCAATTGGTTTTATTGAGGCGATAGTAATGATAGGGAAAGAAGAGGGAATCAAAGGGTATTGGAAGGGAAACCTCCCTCAGGTGATTCGGATCAT ACCTTATAGTGCCGTCCAGCTCTTTGCTTATGAAACTTACAAGAATTTGTTTAAGGGAAAGGATGGTGAACTCTCAGTTATTGGCAGACTTGCAGCAGGT GCTTGTGCAGGCATGACATCTACTTTTGTAACATATCCTTTGGATGTCCTGAGATTACGCTTAGCAGTTGAACCTGGGTATCGCACTATGTCTGAGATTG CGTTAACAATGTTACGGGAGGAAGGAGTTGCATCATTTTACTATGGTCTTGGGCCTTCTCTTCTTGGCATTGCACCATATATTGCCGTGAACTTTTGCAT TTTTGACTTGGTGAAGAAGTCATTGCCTGAGAAATATCAACAGAAGACTCAATCATCTCTACTGACAGCTGTGGTGTCTGCCGCTGTTGCAACTCTCACT TGCTATCCTTTGGATACAGTAAGAAGACAAATGCAAATGAAGGGTACACCTTACAAATCAGTTTTGGATGCCATTCCAGGAATCGTGCAGCGTGATGGAG TTATTGGCTTGTATAGGGGTTTTGTTCCCAATGCATTAAAAACCCTTCCAAATAGCAGCATTAGGCTTACCACTTTTGATATCGTGAAGCGTCTAATTGC AGCTGGTGAGAAAGAGTTTCAGAGAATTGTGGAGGAAAACCGCCAGAAACAAAGCCAAGTTGCCAATAATTGA
AA sequence Show only first row Show all	>Potri.016G115400.2 pacid=42809471 polypeptide=Potri.016G115400.2.p locus=Potri.016G115400 ID=Potri.016G115400.2.v4.1 annot-version=v4.1 MRDKERAILCFQTLPNLKTTHCSLTETTHHREPLWRNAQFSCRIRSDGSNGSFGNFASVSMAENKKDKGNEFAPSTAQLLKHPLAILAFFPRDAAIFAAG AVAGAAAKTVTAPLDRIKLLMQIHGVRAGQESAKKAIGFIEAIVMIGKEEGIKGYWKGNLPQVIRIIPYSAVQLFAYETYKNLFKGKDGELSVIGRLAAG ACAGMTSTFVTYPLDVLRLRLAVEPGYRTMSEIALTMLREEGVASFYYGLGPSLLGIAPYIAVNFCIFDLVKKSLPEKYQQKTQSSLLTAVVSAAVATLT CYPLDTVRRQMQMKGTPYKSVLDAIPGIVQRDGVIGLYRGFVPNALKTLPNSSIRLTTFDIVKRLIAAGEKEFQRIVEENRQKQSQVANN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.016G115400 [exp]	0	1
AT3G57360			unknown protein		Potri.017G142200 [exp]	2.44	0.7993
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	5.65	0.8022
AT5G12900			unknown protein		Potri.001G016600 [exp]	6.00	0.7978
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	8.00	0.7126
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	15.71	0.7334
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Potri.010G012800 [exp]	16.43	0.7193	PRL1.1
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	17.14	0.7565
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002300 [exp]	18.22	0.7749
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	20.92	0.7609
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.001G395300 [exp]	21.44	0.7232

Compare expression of checked genes

Potri.016G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.