Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAX3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 570 / 0 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 538 / 0 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 461 / 1e-160 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 326 / 1e-107 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 325 / 3e-107 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 304 / 6e-99 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099900 [exp] 750 / 0 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.001G251200 [exp] 537 / 0 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.009G045800 [exp] 536 / 0 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G469800 [exp] 325 / 3e-107 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 317 / 3e-104 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 313 / 4e-103 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027791 [exp] 580 / 0 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 559 / 0 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10035507 [exp] 555 / 0 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 553 / 0 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10040674 [exp] 476 / 2e-166 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10033396 [exp] 313 / 2e-101 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 314 / 1e-100 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 306 / 2e-99 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10018231 [exp] 296 / 2e-96 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10006068 [exp] 296 / 7e-92 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.016G115500.1 pacid=42810619 polypeptide=Potri.016G115500.1.p locus=Potri.016G115500 ID=Potri.016G115500.1.v4.1 annot-version=v4.1 ATGGCTTCATTGCAGGAACCATGGCTCTTGGAGAATGGAAACCTTAAGGGCTCAAGCAAGGAGATAAGACATGCCAGGACCGCACACAACATGTCATCCT CGTCATTGCGCAAGAAGTCAGACCTCACTCTTGTATCGAAAGTTCGATGTGGAATGCTTAGACACTTGTTAACTAACCTTCAAGAGGTCATTTTGGGGAC TAAACTTACAGTTCTTTTTCCTGCCATCCCACTAGCCATTGCTGCTGAATGTTATGGCTTTGGAAGACCCTGGGTTTTTGCTTTGAGCTTGCTTGGACTG ACCCCACTTGCAGAACGTGTCAGCTTTTTGACAGAGCAAATTGCTTATTACACTGGTCCGACAGTGGGAGGGCTCCTAAATGCAACATGTGGTAATGCTA CAGAACTGATAATAGCTATTTTTGCACTCTGGCAACACAAGATACAAGTGGTGAAATATTCACTCTTGGGTTCCATACTATCAAACCTACTTCTGGTTCT TGGCACCTCTCTCTTCTGTGGTGGCATTGCCAACCTTGGAAAGGAACAAAAATATGATAGGAGACAAGCTGACGTGAACGCGCTGCTTTTGCTCCTGGCA TTGCTGTGCCATATGCTGCCACTGCTGTTTCGGATTTCTGCAGCCTCCGTTTCCCTCACGGAAGTCCCAATACTGCAGTTGTCGAGAGTAAGCAGCATTA TAATGCTGCTTGCATACATTACATACATTATCTTTCAGTTAGTGACACACAGGCAACTATTTGAAGCACAAGAGGAATCCGTGGAAGATGGCGATGATGT GCTTTCAGAAGAAACACCTGTGATAGGATTCTGGAGTGGAATAGTTTGGCTGGTTGGAATGACTGCTGTCATAGCCTTGCTGTCAGAATATGTTGTGGGC ACGATCGAGGATGCTTCAGAATCTTGGGGCCTTTCTGTCAGCTTCATTAGCATTATCTTGCTGCCAATTGTTGGAAATGCAGCTGAACATGCTGGAGCAG TCATTTTTGCTTTTAAAAACAAGTTGGATATATCTTTAGGTGTTGCACTAGGCTCTGCAACTCAAATTGCTATGTTTGTGGTTCCACTTTGTGTAATTGT TGCTTGGATTTTGGGCATTGAAATGGATCTTAACTTCAATCTCCTTGAGACTGGTGCTCTTACCTTATCAATAATCACCACAGCCTTCACCTTACAGGAC GGTACTTCTCACTACCTGAAAGGATTGGCTCTATTGCTGTGCTACGTTGTTATTGGGGCGTGCTTTTTCTTAAACAAGACACCATTGAACCATGGAAATG TCATCGATTTGGGAGTCAAGTCCGCAGCTAGATCAGTCATTGCAGCTTAA
AA sequence Show only first row Show all	>Potri.016G115500.1 pacid=42810619 polypeptide=Potri.016G115500.1.p locus=Potri.016G115500 ID=Potri.016G115500.1.v4.1 annot-version=v4.1 MASLQEPWLLENGNLKGSSKEIRHARTAHNMSSSSLRKKSDLTLVSKVRCGMLRHLLTNLQEVILGTKLTVLFPAIPLAIAAECYGFGRPWVFALSLLGL TPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALWQHKIQVVKYSLLGSILSNLLLVLGTSLFCGGIANLGKEQKYDRRQADVNALLLLLA LLCHMLPLLFRISAASVSLTEVPILQLSRVSSIIMLLAYITYIIFQLVTHRQLFEAQEESVEDGDDVLSEETPVIGFWSGIVWLVGMTAVIALLSEYVVG TIEDASESWGLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWILGIEMDLNFNLLETGALTLSIITTAFTLQD GTSHYLKGLALLLCYVVIGACFFLNKTPLNHGNVIDLGVKSAARSVIAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	0	1	CAX3.2
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.003G122000 [exp]	1.00	0.9576
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	1.41	0.9553
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.014G122700 [exp]	2.82	0.9487
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	3.87	0.9532
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	7.74	0.9258
AT3G19900			unknown protein		Potri.010G169700 [exp]	8.66	0.9447
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	9.48	0.9399
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G151725 [exp]	10.48	0.9319
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	11.40	0.9132
AT5G40420		OLE2, PA23, OLE...	oleosin 2 (.1)		Potri.012G083400 [exp]	11.83	0.9099

Compare expression of checked genes

Potri.016G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.