Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01460 848 / 0 LMBR1-like membrane protein (.1) AT3G08930 837 / 0 LMBR1-like membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100200 [exp] 868 / 0 AT5G01460 825 / 0.0 LMBR1-like membrane protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027794 [exp] 856 / 0 AT5G01460 921 / 0.0 LMBR1-like membrane protein (.1) Lus10035505 [exp] 853 / 0 AT5G01460 917 / 0.0 LMBR1-like membrane protein (.1) Lus10004814 [exp] 729 / 0 AT5G01460 797 / 0.0 LMBR1-like membrane protein (.1) Lus10002488 [exp] 263 / 8e-84 AT5G01460 286 / 2e-93 LMBR1-like membrane protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [poplar] [flax] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Potri.016G116200.5 pacid=42809660 polypeptide=Potri.016G116200.5.p locus=Potri.016G116200 ID=Potri.016G116200.5.v4.1 annot-version=v4.1 ATGGGAGATTTCAATTTAGCACTAGTAATCGTAGCTATTGTAGTATGCATAATCGTTTTCTTGTTCAATATCTACCTTCTAGTCAATTACCAGCATCCTG ACGACAAGAATCAAGCTTATTTCCCCAAATTCGTCGTCGTTTTTGGCCTCTTCGTTGCCGCTATCTCGATTTTGATGTTACCGGCTGACGTAGCGAACCG GCAAGCGTGTCGTCATGCGATTTATAATGGCGCGTGTAATCTTACCTTGCCAATGAAGGATCTGTGGATTGCTGTATACATTGTTGATGCTGTGCTTGTT TTTTTCATCATTCCATTCGCGATGTTTTACTACGAAGGCGATCAGGACAAGAGTGTTGCTAAAAGGATTAAAAGTGCTTTATTGTGGGTTATAACGACGG CAATTGTGTGTGGTCTTGTGCTCGGCATTTTATATGGGCTTGTTGGAAAGGTTGACTTCACTGTTAGGCATCTCTCTTCAACCACAACTACTTTTCCGAG TACGTGGGAGTTCTCTAGAAATCAACCATGTATTGGAAGTGTTGCACGCGAGTGCTCTGCATATCTTGCAAATGCTTCCTCAGAGAAAACATGGACAATG CGCGCCACATTTCCAGAATATGTGGTTGCTCTAGCTACAATTGTTGGATCTGTTCTCTTTGCGATTTTTGGTGGTGTTGGGATTGCTTGTTTGCCGTTGG GACTTATCTTTTCTTTCATCCGGCGTCCCAAGGCAGTTATCACTCGCTCCCAGTATATTAAGGAGGCAACTGAGCTTGGTAAAAAAGCAAGAGAACTCAA AAAAGCAGCTGATGTACTCCATCAGGAGGAAAGAAGTGGCAACAAGGGTAGAAAATGGCGTAAAAATGTCAAGGCAGTAGAAAAGGAGTTGCTTCAGCTG GAAGAAGATGTAAAGCTGCTAGAAGAGGTGTATCCTCAAGGGGAGAAGGCTGAGACATCCTGGGCTTTGACTGTTCTTGGCTACTTGGCAAAACTTGTGT TGGGAATCTTAGGGTTGATTGTTTCAGTGGCTTGGGTTGCTCATATTATAATATATCTGTTGATTGACCCACCTCTTTCTCCTTTTCTAAATGAGGTCTT CATCAAGTTGGATGATATATGGGGTCTTCTTGGTACTGTTGCATTTGCTTTCTTCTGCTTCTATCTTCTGCTTGCAGTCATAGCTGGGGCAATGATGCTG GGCCTGAGATTGGTTTTCATTACAATTCATCCCATGAAGTGGGGAGCCACTCTAATGAACTCCTTCCTTTTCAATGTGGGACTCATTCTCCTATGCTCAA TTAGTGTGATTCAGTTCTGTGCCACTGCATTTGGCTACTATGCACAAGCAACAGCAGCTCAAGAAATTTTTGGCCACACATTGCAGTCACTTCGTGGAAT TAAATATTTGTACAAGTATAATGTGTTCCAAATTGCATTTGTTGTTCTAGCGGGTTTGACTTTTGTGTATTATGCCGCCTTTGGATGGAGAAGAAAGAAG CCTAGCGGCAGGTTCCAACTTTCCTCGTGA
AA sequence Show only first row Show all	>Potri.016G116200.5 pacid=42809660 polypeptide=Potri.016G116200.5.p locus=Potri.016G116200 ID=Potri.016G116200.5.v4.1 annot-version=v4.1 MGDFNLALVIVAIVVCIIVFLFNIYLLVNYQHPDDKNQAYFPKFVVVFGLFVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWIAVYIVDAVLV FFIIPFAMFYYEGDQDKSVAKRIKSALLWVITTAIVCGLVLGILYGLVGKVDFTVRHLSSTTTTFPSTWEFSRNQPCIGSVARECSAYLANASSEKTWTM RATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADVLHQEERSGNKGRKWRKNVKAVEKELLQL EEDVKLLEEVYPQGEKAETSWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGTVAFAFFCFYLLLAVIAGAMML GLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFGWRRKK PSGRFQLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01460			LMBR1-like membrane protein (....		Potri.016G116200 [exp]	0	1
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	6.16	0.9305
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	6.70	0.8950
AT5G64180			unknown protein		Potri.015G005600 [exp]	7.21	0.9213
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Potri.004G141000 [exp]	9.32	0.8859	HOMOLOG.1
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Potri.007G017900 [exp]	10.58	0.8940
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	13.41	0.9166	ADK2.2
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	13.63	0.8846
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	15.16	0.8885
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	15.19	0.9055
AT1G55830			unknown protein		Potri.001G370700 [exp]	16.43	0.8632

Compare expression of checked genes

Potri.016G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.