Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) AT2G38185 343 / 3e-114 RING/U-box superfamily protein (.1.2.3.4) AT2G38220 259 / 4e-82 RING/U-box superfamily protein (.1) AT2G38195 253 / 2e-79 RING/U-box superfamily protein (.1.2) AT4G24204 75 / 2e-15 RING/U-box superfamily protein (.1.2.3) AT3G23280 63 / 1e-10 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 57 / 2e-08 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT3G53410 50 / 1e-06 RING/U-box superfamily protein (.1) AT1G59560 49 / 4e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT5G03200 46 / 4e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100400 [exp] 723 / 0 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G251900 [exp] 431 / 5e-148 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.014G020900 [exp] 172 / 6e-49 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 75 / 1e-15 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.005G225300 [exp] 60 / 2e-09 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 56 / 2e-08 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 54 / 1e-07 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.014G138000 [exp] 53 / 2e-07 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.003G156400 [exp] 52 / 6e-07 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002487 [exp] 479 / 2e-166 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10004813 [exp] 446 / 1e-153 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10010392 [exp] 65 / 5e-12 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10003551 [exp] 56 / 1e-08 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009035 [exp] 56 / 4e-08 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 51 / 2e-06 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10027994 [exp] 50 / 2e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10000533 [exp] 50 / 3e-06 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10023182 [exp] 49 / 3e-06 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037928 [exp] 49 / 5e-06 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) CL0229 [poplar] [flax] PF16040 [poplar] [flax] DUF4792 Domain of unknown function (DUF4792) CL0229 [poplar] [flax] PF16041 [poplar] [flax] DUF4793 Domain of unknown function (DUF4793)
Representative CDS sequence Show only first row Show all	>Potri.016G116300.4 pacid=42809248 polypeptide=Potri.016G116300.4.p locus=Potri.016G116300 ID=Potri.016G116300.4.v4.1 annot-version=v4.1 ATGGCACAGCCGGATCAAATTTCTGTTTCTTCTAGGGATCATTCCGCTGCTGCTGCATCATCATCTTCAAATCACACTTCTTTTCCAGTCCGCGAAGAAT ATGATCATGATCATGATCAACGGTTACGTCAACTCGAATTTAGACAGCCAGAGATAGAGCAGCAGCAGCAGGAATACATTGAAATTTCTAATCGAGGGAA TTATTTCGGGTTTAATGATGTAGCTTCTGTTAGAGATGACACGTGGTCTTGTGTCGTCGTGGTTCTCACGTTCTGGTTCTTCGTGTCGATGACTATGATT TTGGGGGTATATGGTGCTATGAGTCTAACCCTAGGACCGAAATGCTCGGTTCTTTTACAACCTACTCCCATATTTGTGCAGTCTATAAAGGTGGAACAGT TGTATGATACTAATCCGGGGCTGATACTATATGGGTTATATACATCTCCTCCGCTTGATGTTGTTGAGACTTGGGATAGAACTCTTAATTTCTCTGTTTC GCCCGATTCTCACAAGGACTTCATGTATTTTCTGAATGAGGGGTCTCAAATAAATATTTCATACAGGGTGAACTCCCCGATCTCCTCCGTTTTCCTTATA ATTGCACAAGGGAGTGAAAGCCTTTCTCAATGGCTTGAGAATCCAACTCGTCCAAACACCACTTTATCATGGAATGTCATTCAAGGAAGTGGTTTTGTCC AGCAGAGTATATTCACATCTGCAAGCTACTATGTTGCAGTGGGCAACTTGAACTCAGAGGAAGTTGAGGTCCAATTAACCCTGAGAGTAAGATCTTTCAT GTACAATACCACTGAAGCTTACTACAAGTGTACTTTTACTGATAGCAAGTGTAGTTTGAGCATTTTGTTTCCCAATGGAAATGCTGTTGTTTTAAACTCT CTTGGTCCAGAAGAGGGTTCATACAGTGAAGAGTGGAATGTCAAAGTCTCCTATGGGCCAAGATGGGCCACATATATTCTTGGCATAGTTGGAATGACTG TTATCATGATGGCGGCTTTCAACTTCTTGAACAAGTTTCAATGTGTTCATGAAGATGGAAATAGACTTCAGTTTGGAGAGGTGGAACCTGGGAGAGCTCC CTTGCTTTCACGTAAAGATGATGACCTTGCAAGTTGGGGCTCATCTTATGATTCTGCCTCAAATGATGAAGAGGGTCTTGAAGATTTTCTTGCAGCAAGT TCACTTGAAGGGAAATCAAGAGATGGTGAAAATGGCAATAATACCCGCCGTCTTTGTGCCATCTGCTTTGACGCTCCTAGGGACTGTTTCTTCCTCCCAT GCGGGCACTGTGTTGCTTGTTTTGCATGTGGAACTAGGATAGCAGAAGCTGATGGTACTTGCCCTATATGTCGTCGGAATATGAGGAAGGTGAGGAAGAT TTTTACAGTTTAA
AA sequence Show only first row Show all	>Potri.016G116300.4 pacid=42809248 polypeptide=Potri.016G116300.4.p locus=Potri.016G116300 ID=Potri.016G116300.4.v4.1 annot-version=v4.1 MAQPDQISVSSRDHSAAAASSSSNHTSFPVREEYDHDHDQRLRQLEFRQPEIEQQQQEYIEISNRGNYFGFNDVASVRDDTWSCVVVVLTFWFFVSMTMI LGVYGAMSLTLGPKCSVLLQPTPIFVQSIKVEQLYDTNPGLILYGLYTSPPLDVVETWDRTLNFSVSPDSHKDFMYFLNEGSQINISYRVNSPISSVFLI IAQGSESLSQWLENPTRPNTTLSWNVIQGSGFVQQSIFTSASYYVAVGNLNSEEVEVQLTLRVRSFMYNTTEAYYKCTFTDSKCSLSILFPNGNAVVLNS LGPEEGSYSEEWNVKVSYGPRWATYILGIVGMTVIMMAAFNFLNKFQCVHEDGNRLQFGEVEPGRAPLLSRKDDDLASWGSSYDSASNDEEGLEDFLAAS SLEGKSRDGENGNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEADGTCPICRRNMRKVRKIFTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01450			RING/U-box superfamily protein...		Potri.016G116300 [exp]	0	1
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	4.00	0.8950
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.002G121900 [exp]	9.16	0.8536	Pt-IFS1.53
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	9.38	0.8690
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.017G069300 [exp]	11.91	0.8084
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.001G222500 [exp]	12.88	0.8039
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	13.41	0.8688
AT2G17710			unknown protein		Potri.005G107800 [exp]	16.73	0.8572
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	19.36	0.8614
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	20.78	0.8587	MYB165
					Potri.003G054001 [exp]	25.37	0.8572

Compare expression of checked genes

Potri.016G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.