Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01400 1349 / 0 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1) AT1G27595 580 / 0 unknown protein AT1G27590 135 / 6e-35 unknown protein AT1G27570 127 / 1e-29 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G107400 [exp] 623 / 0 AT1G27595 762 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005032 [exp] 1518 / 0 AT5G01400 1159 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1) Lus10028229 [exp] 370 / 6e-111 AT1G27595 494 / 3e-161 unknown protein Lus10007230 [exp] 259 / 1e-73 AT1G27595 340 / 7e-105 unknown protein Lus10028228 [exp] 145 / 5e-38 AT1G27590 271 / 4e-91 unknown protein Lus10007229 [exp] 142 / 1e-37 AT1G27590 281 / 1e-95 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11935 [poplar] [flax] DUF3453 Domain of unknown function (DUF3453)
Representative CDS sequence Show only first row Show all	>Potri.016G116600.1 pacid=42809555 polypeptide=Potri.016G116600.1.p locus=Potri.016G116600 ID=Potri.016G116600.1.v4.1 annot-version=v4.1 ATGGTAGCAATGACGAAATCGAGTTCAAGAGAAAGACTAGCGAGTCTCATCAACTCAGCCAAGTCTGCCTCTGACATACCTTCAAAGCTCCAAACTTTGC GTCAATTAAACCAAATTTTGCAACAACAAGAAAACGCTAACTCACTCTCTGAGTTCCTTCCTCGAATTTTCGAGTTTCAGTCTGATCAGCACTCTCCTGT TCGCAAATTTGCCACTGAGATGATTGGAGAGATTGGATTGAAGCATTTAGAATTTGTGCCCGAAATTGTTCCGGTTTTAATGTTAGTTTTGGAAGATCTT GTACCGGCTGTTGCTAGACAAGCTATTACTTGTGGGATCAGTTTGTTTCGGGCTACTCTCGAAAAACTTGCAATTCAGGGTCTTTATACTAGCGAGCTGG ATGATTTGCTTAAGTCTTCGTGGTCATCGATGTTAGAGTTCAAGGAAAAAATTTACTCCATAGCTTTTCAGCTGGGAAGTGGTGGTGTAAGATTGCTGGC ACTGAAGTTTGTTGAAGAAGTCATTCTTCTTTACACTCCTGATCCTTATGGCACTTCAGAGCCCCCTTCTCATGAAGGATCAAGTGTGGAATTTAACATA TCATGGCTCCGTGGGGGCCACCCTGTACTAAATGTTGGAGATTTGTCAATTGAGGCCAGCAGAAAATTGAGTTTATTGCTCGATCAGCTTAGGATGCCAA CAGTGAAATCTATCAGTAACTTAATGATCATTGTGCTTGTTAATAGCCTTGCCACGATTGCAAAGAAAAGGCCTCCATGCTATGGACGCATTCTGCCAGT TTTACTTGGTTTGGATCCCTCAAACTCTGTTATTGAAGGGATGCATGGTTATGGGGCACATCATGCTTTAAAAAATGCCTTCCTCACCTGCTTGAAGTGC AATCACCTGGGTGCTGCACCGTGGCGGGATCGTTTAGTTGGTGTTCTAAAAGAGATGAAAGCAGGAGAGTTGGCAGAGGAAGCGCTACAAGTTTTAAGGA GCAATGGAAGTGTAGAGGAGGCAAAGGAAGATTTTCTAGTTGCACAGGAAGAAAAACTCTTAATTAAGTCATCTGATGGCATTCCAAATAATTCAGCAAG GAAACGATCTGGACCAGAAGACAGTATTGATTTGGCTGATTTGGCTAAAGATGATGATGTGTCTGGAAAACGTGTCAAATCATCCCCCAGTGTCTCGGAG GAATCATCTAAAGAGTTGGATCATAGAGCTAACAAAAAAGATGATGATAATGGACCTGTGCAGCAACTTGTTGCTATGTTTGGAGCCTTGGTTGCTCAAG GTGAAAAAGCTGTTGGTTCTTTGGAGATTCTTATTTCAAGCATCTCTGCTGACTTGTTAGCTGAAGTAGTGATGGCTAACATGCGCTACCTTCCTACCGG TCATCCCCAAGCGGAAGGAGATGATGAGTCACTATTGAACATGACTATTGTTGGCAGTGACACTAGAGCCAAGTATCCATCATCTTTTCTGACTAATGTT CTTTCACTTTCTAGTTCCTTCCCACCTATAGCTGCACAACTGAATGCTGGTCATTCAGTATCCAAAGACATACCGACAACAGACGAGGAAGAACTGCAGA CGACAACAGACGAGGAAGAACTGCAGACAACAAAAGACGAGGAAGAACTCCATGTTGCAGCAGCTGATGTCGCTGATGTATATACTGGAAAAGCTCATAG TGCTGAAGATGAACTGATGCCTGCAGGTTTACCTGCTTCTTCAAATGTCGATTTATCTGGGATGCAGATGGATGGTTTGGCTATTTCATCTAATATCCAT GATTTTGAGAATTTAGACAGTGAAATACCTGGTCTAGATTCTTCTGCTCGTAATGATGTATTTTCAGAGACCATGGGTGCTTCTTCACTGGTCTCTACTG ATATTGAAGATGCCAGCCAAGAGCAAGGTACAAGTCTGGGTACAAGGTCAAACCAGGAAGTGCTTCCATCAATATCAAATGACAGGTCAGAGGAGCTAAG TCCAAAAGCAGCTGCTACGGATTCCAACAGCCTGATCTCCTCAACTGCAACTTCTGTGCGTTTACACCAGCCTCTTGTTCTGCCTAAGATGTCTGCACCT GTTGTCAATCTTGTTGACGAACAGAAGGATCAGCTGCATAATTTGGCTTTCATACGCATCATTGAGGCATACAAGCAAATAGCAGTTGCTGGAAGTTCAC AATTTCGCCTTTCCTTGCTTGCTTCTTTAGGAGTTGAGTTTCCTTCAGAGTTAGACCCATGGGAACTCCTTAAAAAGCACATATTGTCAGATTATGTGGT TCATGAGGGACACGAGTTGACATTGCATGTCCTCTACAGGTTATTTGGTGAGGTAGAAGAGGAACATGACTTCCTTTCTTCTACAACCGCTGCTTCTGTG TATGAAATGTTCCTTCTGACTGTGGCTGAAATGCTTAGAGATTCTTTTCCTCCTTCAGACAAATCTTTAAGTAGATTGCTTGGTGAAGCTCCTTATCTTC CAAATTCAATTTTCAGTCTATTAGAGTCCTTGTGTTCTCCTGGAAACATCGATAAAGCTGAGGAGTTGCAAAGTGGAGATCGAGTTACTCAAGGTCTCAG CACTGTATGGAGCCTGATTTTGCTGAGGCCTCCTATTCGAGAATCCTGCTTAAAAATTGCTCTGCAGAGTGCAGTTCATCATTTGGAAGAAGTGCGTATG AAGGCACTTCGTCTGGTGGCAAATAAGCTTTATCCTCTCTCATCCATCGCTCAACAGATAGAAGATTTCGCAAAGGAAAAGCTGCTTTCTGTGGTAAATA GTGATGCTACAGAAAGCATGGATGCTGAAGGGTCATTCACTGAATCACAGAAGGATTCGATTTTGGAAAAACCATCAAATGAGCATCAATCTATGAGTGC CATCAGTAAAGATATCTCCTCTGAGACTCATCAGTCATGCACATCTGAAAGTGTATCGTCACTCTCAATCTCAGAGGCCCAGCGGTGCTTGTCACTGTAT TTTGCCCTGTGCACAAAGAAGCACTCCCTTTTTCGCCAAATTTTTATTGTTTATAAAAGTGCATCAAAGGCAGTTAAACAGGCAGTTAATCGGCACATTC CTATACTAGTCCGTACTATGGGTTCGTCATCTGATCTTCTTGAAATAATTTCAGATCCTCCTATTGGAAGCGAGAATCTTCTGATGCAGGTTTTACAAAC ACTGACAGAAGGGGCAGTTCCTTCACCTGAATTGTTATTCACCATTAGGAAGTTGTATGATTCAAAAATAAAGGATGCAGAGATCCTAATTCCAATATTA CCATTCCTACCCAGAGATGAGATTTTGCTGATCTTTCCCCATTTAGTGAATCTTCCTCTGGATAAGTTCCAAATTGCACTTGCTCGTACACTACAGGGAT CATCTCATTCTGGTACGATGCTCTCTCCAGCTGAAGTATTAATTGCCATCCATGGTATTGATCCTGACAGGGACGGAATCCCCTTGAAGAAGGTTACAGA TGCTTGCAATGCTTGTTTTGAGCAACGACAGATATTCACTCAGCAAGTTCTTGCGAAGGTCTTAAATCAGTTGGTTGAGCAAATTCCTCTTCCTTTATTA TTCATGCGCACGGTACTACAGGCTATAGGTGCTTTTCCAGCATTGGTGGAGTTTATTATGGAGATCCTTTCTCGTCTCGTAAGCAAGCAGATATGGAAGT ACCCGAAGTTGTGGGTTGGCTTCCTGAAGTGTGCACTATTGACGAAGCCTCAGTCATTCAATGTGTTACTTCAGCTTCCTCCACCACAACTGGAAAATGC ACTGAACAGAACCGCAGCACTGAAAGCTCCTTTGGTTGCCTATGCTAGCCAACCAAACATTAAATCTTCACTTCCAAGGTCTGTTCTGGTGGTCCTGGGA ATAGCTCCAGACCCTCAGACTTCAAGTCAAGCACAGACAAGTCTGGCACAAACTGGAGATACGAACAACTCAGATAAGGATGTGACTGTAGAGAATTCAA AAACTGGAGAAACGAGCAACTCAGTTAAGGAGGTGCTGACAGAGAAATCTAAAGAATCTTCTGTTGCTAGCTGA
AA sequence Show only first row Show all	>Potri.016G116600.1 pacid=42809555 polypeptide=Potri.016G116600.1.p locus=Potri.016G116600 ID=Potri.016G116600.1.v4.1 annot-version=v4.1 MVAMTKSSSRERLASLINSAKSASDIPSKLQTLRQLNQILQQQENANSLSEFLPRIFEFQSDQHSPVRKFATEMIGEIGLKHLEFVPEIVPVLMLVLEDL VPAVARQAITCGISLFRATLEKLAIQGLYTSELDDLLKSSWSSMLEFKEKIYSIAFQLGSGGVRLLALKFVEEVILLYTPDPYGTSEPPSHEGSSVEFNI SWLRGGHPVLNVGDLSIEASRKLSLLLDQLRMPTVKSISNLMIIVLVNSLATIAKKRPPCYGRILPVLLGLDPSNSVIEGMHGYGAHHALKNAFLTCLKC NHLGAAPWRDRLVGVLKEMKAGELAEEALQVLRSNGSVEEAKEDFLVAQEEKLLIKSSDGIPNNSARKRSGPEDSIDLADLAKDDDVSGKRVKSSPSVSE ESSKELDHRANKKDDDNGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPTGHPQAEGDDESLLNMTIVGSDTRAKYPSSFLTNV LSLSSSFPPIAAQLNAGHSVSKDIPTTDEEELQTTTDEEELQTTKDEEELHVAAADVADVYTGKAHSAEDELMPAGLPASSNVDLSGMQMDGLAISSNIH DFENLDSEIPGLDSSARNDVFSETMGASSLVSTDIEDASQEQGTSLGTRSNQEVLPSISNDRSEELSPKAAATDSNSLISSTATSVRLHQPLVLPKMSAP VVNLVDEQKDQLHNLAFIRIIEAYKQIAVAGSSQFRLSLLASLGVEFPSELDPWELLKKHILSDYVVHEGHELTLHVLYRLFGEVEEEHDFLSSTTAASV YEMFLLTVAEMLRDSFPPSDKSLSRLLGEAPYLPNSIFSLLESLCSPGNIDKAEELQSGDRVTQGLSTVWSLILLRPPIRESCLKIALQSAVHHLEEVRM KALRLVANKLYPLSSIAQQIEDFAKEKLLSVVNSDATESMDAEGSFTESQKDSILEKPSNEHQSMSAISKDISSETHQSCTSESVSSLSISEAQRCLSLY FALCTKKHSLFRQIFIVYKSASKAVKQAVNRHIPILVRTMGSSSDLLEIISDPPIGSENLLMQVLQTLTEGAVPSPELLFTIRKLYDSKIKDAEILIPIL PFLPRDEILLIFPHLVNLPLDKFQIALARTLQGSSHSGTMLSPAEVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLL FMRTVLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFNVLLQLPPPQLENALNRTAALKAPLVAYASQPNIKSSLPRSVLVVLG IAPDPQTSSQAQTSLAQTGDTNNSDKDVTVENSKTGETSNSVKEVLTEKSKESSVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	0	1
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	2.00	0.9165
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	2.44	0.9099
AT3G61690			nucleotidyltransferases (.1)		Potri.012G000900 [exp]	3.46	0.8817
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	6.00	0.8604
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	6.63	0.8463
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	6.78	0.8302
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	7.07	0.8615
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	7.34	0.8399
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	8.36	0.8745
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	8.36	0.8549

Compare expression of checked genes

Potri.016G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.