Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 249 / 8e-82 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 92 / 7e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 91 / 2e-21 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 87 / 6e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 71 / 8e-14 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 70 / 2e-13 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 67 / 2e-12 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT1G55900 63 / 3e-11 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100800 [exp] 393 / 2e-138 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 278 / 3e-93 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 268 / 2e-89 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 91 / 3e-21 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 89 / 2e-20 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 75 / 6e-15 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 71 / 2e-13 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 67 / 2e-12 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G364500 [exp] 66 / 7e-12 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009890 [exp] 271 / 2e-90 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 270 / 3e-90 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 266 / 1e-88 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 261 / 2e-86 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004810 [exp] 238 / 7e-77 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 86 / 5e-19 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 85 / 1e-18 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040202 [exp] 78 / 4e-18 AT3G55960 77 / 3e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10025376 [exp] 71 / 1e-13 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 69 / 7e-13 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.016G116700.2 pacid=42809772 polypeptide=Potri.016G116700.2.p locus=Potri.016G116700 ID=Potri.016G116700.2.v4.1 annot-version=v4.1 ATGAATTGGTTACGGTTTATAACCAAGTTGTTTTTACAGGTTTTAATAGGGACTCCTCAATTTTTTCTTTCTTATATTTGTTTCGCATTTCCTCTTCTTT CCTCTTCTTCTTCTTTTAAGCCCTTGCCTATTGTTGAAATTCCTCTGCGAGAAACCACGTCAAAAAAGATCACAGACACGGCCCATGATAGCACCTGTGT TCCTGATGATGTTAGCAATTCTGGTGCTAGTGATGATTCCCCCACTGAAAAGCTCACTGTGGTGCTTGACCTGGATGAAACTCTAGTTTGTGCATATGAG ACTTCTAGCTTGCCACCCATTATTCGCACCCGAGCAGTAGAAGCAGGGGTGAAATGTTTTGAATTGGAATGTTTCTCTTCAGAGAAGGATGTTGAAGGAA AACCAGAAATTAATCATGTGACAGTGTTTGAAAGACCTGGTTTGAAAGAGTTCTTGAAACAGATTGGTGAATTTGCAGATTTGATTTTGTTTACTGCTGG TATTGAAGGTTACGCCAGTCCACTCTTTGACAGGATAGATGTGGAGAACCAATTTAGTCAACGTCTTTTTCGACCTTCAACTGTTAGCACGGAATATCGA GAACTTGTGAAGGATCTGTCATGTTTATCAAAGGATCTCTCTCGAGTTGTGATTGTTGACAACAACCCATTCAGTTTCTTGCTACAGCCATTGAATGGAA TCCCATGTGTTCCGTTCTCTGCTGGACTGCCATATGATGACCAGCTTTTGGATGTCCTCCTTCCACTCCTCAAAAACCTATCCCTGCAAAAGGATGTTAG GCCTGTACTTCACAAGAGGTTCCACATGCCTGAATGGTTTCAAATGCATGGCATTCCTGCTTCTGCTTTGACAGTGTGA
AA sequence Show only first row Show all	>Potri.016G116700.2 pacid=42809772 polypeptide=Potri.016G116700.2.p locus=Potri.016G116700 ID=Potri.016G116700.2.v4.1 annot-version=v4.1 MNWLRFITKLFLQVLIGTPQFFLSYICFAFPLLSSSSSFKPLPIVEIPLRETTSKKITDTAHDSTCVPDDVSNSGASDDSPTEKLTVVLDLDETLVCAYE TSSLPPIIRTRAVEAGVKCFELECFSSEKDVEGKPEINHVTVFERPGLKEFLKQIGEFADLILFTAGIEGYASPLFDRIDVENQFSQRLFRPSTVSTEYR ELVKDLSCLSKDLSRVVIVDNNPFSFLLQPLNGIPCVPFSAGLPYDDQLLDVLLPLLKNLSLQKDVRPVLHKRFHMPEWFQMHGIPASALTV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.016G116700 [exp]	0	1
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	6.78	0.7174
AT1G27070			5'-AMP-activated protein kinas...		Potri.008G194300 [exp]	13.30	0.7075
AT2G46090			Diacylglycerol kinase family p...		Potri.002G162900 [exp]	14.28	0.6924
AT5G52580			RabGAP/TBC domain-containing p...		Potri.006G066300 [exp]	17.88	0.6973
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.015G116700 [exp]	32.52	0.6114
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	37.60	0.6473
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.017G001700 [exp]	40.00	0.6214
AT5G62960			unknown protein		Potri.012G082400 [exp]	58.65	0.6458
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	59.79	0.6484	WNK8.2
AT5G44090			Calcium-binding EF-hand family...		Potri.005G227100 [exp]	63.71	0.6198

Compare expression of checked genes

Potri.016G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.