Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01380 185 / 5e-57 Trihelix Homeodomain-like superfamily protein (.1) AT2G38250 180 / 2e-55 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 70 / 2e-13 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 66 / 2e-12 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G03680 56 / 9e-09 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 56 / 1e-08 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G33240 55 / 2e-08 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G76890 55 / 2e-08 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 53 / 9e-08 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G63420 52 / 2e-07 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G101400 [exp] 290 / 9e-99 AT5G01380 179 / 8e-55 Homeodomain-like superfamily protein (.1) Potri.001G129900 [exp] 165 / 2e-49 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.003G104500 [exp] 163 / 1e-48 AT2G38250 118 / 3e-31 Homeodomain-like superfamily protein (.1) Potri.010G055000 [exp] 64 / 2e-11 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.008G179700 [exp] 64 / 2e-11 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.001G454500 [exp] 62 / 1e-10 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 62 / 2e-10 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.019G010200 [exp] 61 / 2e-10 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 59 / 1e-09 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004806 [exp] 190 / 1e-58 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10002481 [exp] 89 / 6e-23 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10020873 [exp] 62 / 1e-10 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10035570 [exp] 61 / 4e-10 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 61 / 4e-10 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 61 / 4e-10 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 60 / 6e-10 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 58 / 3e-09 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10014375 [exp] 58 / 3e-09 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 57 / 8e-09 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G117300.1 pacid=42809689 polypeptide=Potri.016G117300.1.p locus=Potri.016G117300 ID=Potri.016G117300.1.v4.1 annot-version=v4.1 ATGGAGGGACATCTTCACCACCAACATCACAATCAGCATCACCTACAGCAATATCAGCTGCTGCAGCAGCAACATCACATCAGTGTAAACGTAGAGGCAA GTGATAAGTTTCCTCAATGGAGTATTCAAGAAACAAAGGAGTTCTTGATGATCCGAGCAGAACTGGATCCAACTTTCATGGAGAAGAAAAGAAACAAAGT TTTGTGGGAAGTTATCTCTAATAAAATGAAAGAAAAGGGTTATAATCGTAGCGCAGAGCAGTGCAAGTGCAAGTGGAAGAATCTTTTTACAAGATACAAG GGTTGTGAGACGATAGAACCTGAAGCTATGAGGCAACAGTTTCCTTTCTACAATGAGTTGCAAGCGATTTTCACATCAAGGATGCAAAGAATGTTACGGG CTGAAGCTGAAGGAGCAGCGACTGGGTTGAAAAAGAAAGCAGTGAAGCTATCTTCTGACGATGAGGATAAGAATGAAGAAATTATTGAGGGCGAAAAGGG TGGCAGTAGAAAGAAGATAAAAAAGGGCAAGGCAATTGGTGGAACTAGTAGCAGTGGAAATAGTATTAGTTTGAAAGAGTCTTTGGAAGATTTCACGAAG CAACAGATTCAAATGGAAATGCAATGGAGAGAAGTATTTGAGGCAAGGGAAAATGAGAGGATGATGAAGGAGATGGAATGGAGACAAACCATGAAACAAT TAGAGAATGATAGGATAGTGATGGAAAGAAGATGGAGAGAGAGAGAAGAGCAAAGAAGGGTGAGAGAAGAGGCTAGGGCTGAGAAGAGGGATGCCCTTAT CACTGCACTCCTAAACAAGCTTAGAAGAGAAGACATGTAG
AA sequence Show only first row Show all	>Potri.016G117300.1 pacid=42809689 polypeptide=Potri.016G117300.1.p locus=Potri.016G117300 ID=Potri.016G117300.1.v4.1 annot-version=v4.1 MEGHLHHQHHNQHHLQQYQLLQQQHHISVNVEASDKFPQWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISNKMKEKGYNRSAEQCKCKWKNLFTRYK GCETIEPEAMRQQFPFYNELQAIFTSRMQRMLRAEAEGAATGLKKKAVKLSSDDEDKNEEIIEGEKGGSRKKIKKGKAIGGTSSSGNSISLKESLEDFTK QQIQMEMQWREVFEARENERMMKEMEWRQTMKQLENDRIVMERRWREREEQRRVREEARAEKRDALITALLNKLRREDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.016G117300 [exp]	0	1
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.004G028800 [exp]	2.00	0.8559
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	6.00	0.7711
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	12.40	0.7981
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	13.11	0.8216
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014372 [exp]	15.09	0.7827
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.008G148000 [exp]	16.12	0.7992	APK2.2
AT1G70000	MYB		myb-like transcription factor ...		Potri.015G069000 [exp]	18.16	0.7669
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	22.75	0.7784
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	22.97	0.7840
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	25.13	0.8048

Compare expression of checked genes

Potri.016G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.