Plant FIBer expression Database

Potri.016G117400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01370 84 / 2e-17 ACI1 ALC-interacting protein 1 (.1)
AT5G58630 59 / 3e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G046900
[exp]
112 / 7e-27 AT5G58630 74 / 3e-14 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002480
[exp]
113 / 6e-28 AT5G01370 81 / 1e-16 ALC-interacting protein 1 (.1)
Lus10001252
[exp]
0 / 1 AT5G01370 61 / 3e-10 ALC-interacting protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14383 VARLMGL DUF761-associated sequence motif
Representative CDS sequence
>Potri.016G117400.1 pacid=42809988 polypeptide=Potri.016G117400.1.p locus=Potri.016G117400 ID=Potri.016G117400.1.v4.1 annot-version=v4.1
ATGAGTCACTCACATAACTCAGGTTCTGGGTGCTTTTCAGGCATAGTACGTCTTCTTCTATGCAGAGGCAGTCACCAAACACACCCATCAGATCAGAGAG
TAGAGCCCATCACTCCAGAGTTCTTCAATCATGTAAAGAAAGATCCGAAAACTGGTATTGATGCTAATGTTGAAGCTCCAGGCAGTACCACGCCAGGTGT
GGTGGCTAGGTTAATGGGGTTAGATTCATTGCCAGATACCAACCGGGTTCCACGAGGAAGGAGTAACCCAGAGTCGGTCACAAGAAGTAGGTCAGTGAAT
TTTATGGATTACTTGCTCCAGTTGGATCTAGCACAAGCACAACATCGCCGAGTGAGAACATCAGTATCATTTCGTGAAGTGCCAGCGTTGATGAATCAAG
AAAACCATGATGTGTACGTTCTTTACTTGGATGATCAAGACAAGAAACCTAAGAAAATGGGATCAAAACAGAGGAAATCTGAAGGGATCAGTTTTGGAGA
TCAGATGAAGCAGAAGAATTATGAAGAGCGAAGCAAGAACAAGGAGGGCATAGTTACAAGGGAAGGAGCAGTAAAGACGGAGAAGAATCGACATAACAAC
AACATGAAGGTTTCCACGTCAAAGAATGAGCCAAAGAGGGTGTCTAGTAGTAGACAATTTTCAAGTGTTGGTAATTGCGATGGTGTCCAATTTTCATCAG
GCTTTGTCATGCCTCATAAAAAAGATGTTTGCAGAAAATCTCGAGAGAATCCAAGGGCAAGAAGTCCAGTGAAGAAGCCCGTAAATCAGAAGGAAGTATT
GGTAGAATCAAAGTTCATGAAGAGGATAAAGAAACGGCAAGCATATAAAGACTCGCAGTCTGATTGTAGCTCAGAAGATTCAAGCACAATTTCTATTTTT
GGTCTCAGTGAATTTTTGGCTCATGATGCAATACCTCTAGCTGGTGACACATGGCCTGTGGACTTGAAGTTCTCAAAGAAGATATCTTCACCAAATCCTC
CAGATTTATCTGATAATATGCTGATCAATGGTGAAGATGAGCCAGTGGGGATCAAGAAAAATGATTTTGAATCATGTAATAATCGCAATAAGGAACATTA
CAGTGAAGTACTGAGAAAGCTCTGCAGGTTGACAGAGGAAGATGTCAAGGAGTCTAGATGGGTAATGAAGAACACGTTTGATTCTGAATGTCTTGAAGAG
ATGTTTACTGAGTTTGGGCAGCACATCCTTGATTTACTTCTATGCCAAGTAGTAGAAGAACTTGCTGAATCTCACATGGAAGAATTTTGA
AA sequence
>Potri.016G117400.1 pacid=42809988 polypeptide=Potri.016G117400.1.p locus=Potri.016G117400 ID=Potri.016G117400.1.v4.1 annot-version=v4.1
MSHSHNSGSGCFSGIVRLLLCRGSHQTHPSDQRVEPITPEFFNHVKKDPKTGIDANVEAPGSTTPGVVARLMGLDSLPDTNRVPRGRSNPESVTRSRSVN
FMDYLLQLDLAQAQHRRVRTSVSFREVPALMNQENHDVYVLYLDDQDKKPKKMGSKQRKSEGISFGDQMKQKNYEERSKNKEGIVTREGAVKTEKNRHNN
NMKVSTSKNEPKRVSSSRQFSSVGNCDGVQFSSGFVMPHKKDVCRKSRENPRARSPVKKPVNQKEVLVESKFMKRIKKRQAYKDSQSDCSSEDSSTISIF
GLSEFLAHDAIPLAGDTWPVDLKFSKKISSPNPPDLSDNMLINGEDEPVGIKKNDFESCNNRNKEHYSEVLRKLCRLTEEDVKESRWVMKNTFDSECLEE
MFTEFGQHILDLLLCQVVEELAESHMEEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01370 ACI1 ALC-interacting protein 1 (.1) Potri.016G117400
[exp]
0 1
AT1G19180 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1... Potri.006G139400
[exp]
10.04 0.8671
AT5G07010 ATST2A ARABIDOPSIS THALIANA SULFOTRAN... Potri.003G193500
[exp]
13.26 0.8571
AT1G49030 PLAC8 family protein (.1) Potri.012G060900
[exp]
16.94 0.8313
AT4G21865 unknown protein Potri.008G172000
[exp]
19.13 0.8553
AT1G07710 Ankyrin repeat family protein ... Potri.016G080700
[exp]
19.18 0.8547
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Potri.011G083900
[exp]
22.13 0.8331
AT3G22250 UDP-Glycosyltransferase superf... Potri.016G019400
[exp]
27.05 0.7783
AT3G29000 Calcium-binding EF-hand family... Potri.008G087900
[exp]
28.98 0.8307
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Potri.014G046900
[exp]
29.39 0.8303 ERF11,Pt-EREBP1.3
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.002G130700
[exp]
29.49 0.8318 AOS.7

Potri.016G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.