Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 84 / 6e-20 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G101600 [exp] 153 / 1e-49 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117800 [exp] 117 / 6e-32 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G187700 [exp] 87 / 3e-21 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 74 / 1e-16 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009082 [exp] 92 / 6e-23 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001254 [exp] 81 / 2e-20 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10027810 [exp] 80 / 4e-20 AT5G05570 84 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2) Lus10002478 [exp] 76 / 4e-19 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2) Lus10030399 [exp] 69 / 8e-15 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10037841 [exp] 68 / 1e-14 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G117700.1 pacid=42809429 polypeptide=Potri.016G117700.1.p locus=Potri.016G117700 ID=Potri.016G117700.1.v4.1 annot-version=v4.1 ATGGCGACCAAATCATCCAATGAAGTTCAAAGCAAAAAGAGAGAGAAGAGAACTGGAAGGGAAAATTTATTGGGTTACAGCGAGGAAACAAAGCCCAGAA GCAGGAAACTTGGAGAAATCGTAGCTAAGTACAGAAAATCCAAGGATGCCTTTTCCCTGGCTACGAGTGCAAAGAACAAGCTGGTGCAAAGGCAGGAAAA GCTTGGTAAAATCAACAATCAAACTGAAGAGCTGGAAGGTAATTCAGAAGACTATGCATCATTGGCCAATGAACTTCTCAAGAAGATGGAGAAAAGAAAA TGGTGGCAAATATGA
AA sequence Show only first row Show all	>Potri.016G117700.1 pacid=42809429 polypeptide=Potri.016G117700.1.p locus=Potri.016G117700 ID=Potri.016G117700.1.v4.1 annot-version=v4.1 MATKSSNEVQSKKREKRTGRENLLGYSEETKPRSRKLGEIVAKYRKSKDAFSLATSAKNKLVQRQEKLGKINNQTEELEGNSEDYASLANELLKKMEKRK WWQI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05570			transducin family protein / WD...		Potri.016G117700 [exp]	0	1
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	4.69	0.7804
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	12.12	0.8015
AT1G63770			Peptidase M1 family protein (....		Potri.001G101975 [exp]	14.86	0.7726
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G151100 [exp]	18.30	0.7852
					Potri.019G023500 [exp]	21.81	0.7491
AT3G19610			Plant protein of unknown funct...		Potri.001G294600 [exp]	25.09	0.7675
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	30.00	0.7741
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017900 [exp]	37.22	0.7838
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.002G032700 [exp]	38.06	0.7825
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.006G220900 [exp]	38.67	0.7672

Compare expression of checked genes

Potri.016G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.