Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51840 750 / 0 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G45300 146 / 3e-39 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1) AT5G65110 77 / 9e-15 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 72 / 3e-13 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT2G35690 62 / 5e-10 ACX5 acyl-CoA oxidase 5 (.1) AT4G16760 60 / 2e-09 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT1G06310 59 / 4e-09 ACX6 acyl-CoA oxidase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G101800 [exp] 839 / 0 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1) Potri.009G011700 [exp] 150 / 6e-41 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Potri.007G090400 [exp] 77 / 9e-15 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.003G079200 [exp] 71 / 8e-13 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 69 / 2e-12 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.005G077600 [exp] 63 / 2e-10 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027811 [exp] 762 / 0 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1) Lus10036122 [exp] 149 / 2e-40 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Lus10041711 [exp] 77 / 1e-14 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10004745 [exp] 69 / 2e-12 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 69 / 4e-12 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 66 / 4e-11 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 64 / 9e-11 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10024038 [exp] 55 / 1e-07 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF02771 [poplar] [flax] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G118000.1 pacid=42808923 polypeptide=Potri.016G118000.1.p locus=Potri.016G118000 ID=Potri.016G118000.1.v4.1 annot-version=v4.1 ATGGCAATCCCTAAAAATCAAGATGAGGTTGAGCAAAATGCAAGGAGTTCTTATTTTAATTTACCGCCGTTGGATGTTTCCGTCGCCTTCCCTCAAGCAA CTCCCGCTTCCACATTTCCTCCTAGCGTGTCGGATTACTTTCAAATTAGTGATTTATTAACCGCGGAGGATCAGGCCATCAGGATGAGAGTGAGGCAGTG TATGGAAAAGGAAATCGCTCCGATAATGGCTGAGTACTGGGAGAAGGCGAAGTTTCCGTTTCATGTTATTCCGAAGCTTGGTGCCTTGGGTATAGCTGGA GGAACGATAAAGGGTTATGGGTGTCCTGGTCTCTCGATCACTACAAGTGCTGTCGCCATTGCAGAAGTTGCTAGAGTTGATGCAAGCTGCTCGACTTTTA TTTTGGTGCATTCATCTCTGGCAATGCTCACCATAGCTCTTTGTGGTTCGGAGGAACAGAAGCAGAAATATTTACCTTCATTGGCAAAGTTTAGCACTGT AGCTTGTTGGGCTTTGACTGAGCCTGACTATGGAAGTGATGCAAGTTCTCTGCAAACAACAGCAACCAAGGTTGAAGGTGGTTGGATACTTGAGGGCCAA AAACGCTGGATAGGAAACAGTACTTTTGCTGATTTACTTGTTATATTTGCTCGGAATACCACAACTGATCAGATTAATGGATATATAGTGAAGAAGGATG CTCCTGGATTAACAGTTACAAAAATTGAAAATAAAATTGGCCTCCGTATAGTACAAAATGGAGATATAGTCATGAAAAGAGTTTTTGTTCCTGATGAGGA CAGGTTGCCTGGAGTCAACTCGTTTCAAGATACAAATAAGGTTCTTGCTGTTTCACGTGTAATGGTTGCCTGGCAACCTATTGGCATATCAATGGGGGTC TATGACATGTGTCACAGGTATCTAAAGGAAAGGAAACAATTTGGAGCCCCATTGGCAGCCTTCCAAATCAATCAACAGAAACTTGTCCACATGCTTGGTA ATGTCCAAGCAATGGTACTAGTTGGTTGGCGCCTTTGCAAGTTGTATGAAAAGGGAACAATGACCCCAGGTCATGCCAGCTTGGCAAAGTCATGGATCAG TTTGAAGGCAAGGGAAACTGCTGCTATTGGGAGGGAGTTACTTGGTGGCAATGGAATTTTGTCTGATTTTCTAGTTGCCAAGGCAATGGGTGATTTAGAA CCCATCTACACATATGAAGGCACATATGACATCAACAGCTTGGTAACAGGCAGAGAAATCACTGGTCTTGCCAGTTTTAAGCCTGCAATGTTGAGCAAGC GAAGTCGCCTGTAA
AA sequence Show only first row Show all	>Potri.016G118000.1 pacid=42808923 polypeptide=Potri.016G118000.1.p locus=Potri.016G118000 ID=Potri.016G118000.1.v4.1 annot-version=v4.1 MAIPKNQDEVEQNARSSYFNLPPLDVSVAFPQATPASTFPPSVSDYFQISDLLTAEDQAIRMRVRQCMEKEIAPIMAEYWEKAKFPFHVIPKLGALGIAG GTIKGYGCPGLSITTSAVAIAEVARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAKFSTVACWALTEPDYGSDASSLQTTATKVEGGWILEGQ KRWIGNSTFADLLVIFARNTTTDQINGYIVKKDAPGLTVTKIENKIGLRIVQNGDIVMKRVFVPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGV YDMCHRYLKERKQFGAPLAAFQINQQKLVHMLGNVQAMVLVGWRLCKLYEKGTMTPGHASLAKSWISLKARETAAIGRELLGGNGILSDFLVAKAMGDLE PIYTYEGTYDINSLVTGREITGLASFKPAMLSKRSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	0	1
AT1G62790			Bifunctional inhibitor/lipid-t...		Potri.001G119000 [exp]	1.00	0.8249
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Potri.014G128600 [exp]	2.00	0.7857	ATMHX.1
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	2.82	0.7943
AT5G49710			unknown protein		Potri.002G104200 [exp]	3.00	0.7926
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	4.69	0.7489
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	5.00	0.7790
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	5.47	0.7512
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	6.00	0.7743
AT3G30390			Transmembrane amino acid trans...		Potri.017G106300 [exp]	6.70	0.7334
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	10.81	0.7583

Compare expression of checked genes

Potri.016G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.