Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01360 578 / 0 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 392 / 2e-133 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 383 / 9e-131 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT1G73140 364 / 2e-123 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 357 / 2e-120 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 352 / 3e-118 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G40160 335 / 4e-112 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01620 314 / 2e-103 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 311 / 1e-102 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G62390 254 / 7e-80 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187600 [exp] 399 / 4e-136 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 394 / 3e-134 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 381 / 6e-130 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 368 / 2e-124 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 364 / 2e-123 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 363 / 5e-123 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187300 [exp] 359 / 8e-121 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G184000 [exp] 355 / 2e-119 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G125500 [exp] 324 / 6e-108 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027813 [exp] 646 / 0 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 633 / 0 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007497 [exp] 399 / 2e-136 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 394 / 2e-134 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 393 / 6e-134 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10040953 [exp] 360 / 3e-121 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 358 / 1e-120 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028141 [exp] 350 / 1e-117 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10042845 [exp] 348 / 5e-117 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 325 / 4e-108 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.016G119100.1 pacid=42809262 polypeptide=Potri.016G119100.1.p locus=Potri.016G119100 ID=Potri.016G119100.1.v4.1 annot-version=v4.1 ATGAGCTTAGCGCCCTCTCAGTCCGCTGCAATGAAACCTTCGAAAGGGAAACTGCCCATTTCCGTTGTCACTATTATAATTTGCAGCTTTGCATTCATTG CTCTCTTGTATACTGACACTTCCAGGTCTCTTTTCAAGCTCAAATCCTGTCCTAGGAGAAATCCAGTTAAAAAATCTAAAGATAGAACTGCAGAGGATAA ACTTAAAAACTTCCAAATGGATGATAGATTCGAGTTCGATCCGGAAGAGTGCACTGTCAATACAGGCAAGTGGATGTTTAACAAGACTCTCAAGCCTTTG TACACGGACAGGAGCTGCCCATATCTAGATAGACAGGTTTCTTGTGTCAAAAATGGACGAAGGGATTCTGATTACCGTCGGTGGGAATGGCAGCCGGATG ACTGTACCTTGCCAAGATTTAATCCAGAGCTTGCTCTTAAGAAACTTAGAGGGAAGAGGTTGCTGTTTGTAGGTGATTCGCTTCAAAGGGGTCAGTGGCA ATCATTTGTTTGTCTGGTGGAATGGATTATACCTGAAGACAAGAAATCCATGAAAGAGGTCGGCTCTCATTCAGTCTTCAGAGCCAAGGAATATGATGCC ACCATTGAATTCTATTGGGCTCCATTTCTCATTGAATCCAACACCGATCACCATATCATAGCAGATCCAAAGAAGAGGATACTGAAAGTGGATTCCATTG ACAAGCACGCCAAACACTGGGGAGGTGTGGACTTTCTTGTGTTCAACACCTATGTTTGGTGGATGAGTGGTATTAGGCTCAAAACATTATGGGGTTCATT TGCAAATGGGGAAGAAGGGTATGAAGAGCTGGACACACCAGTTGCTTACAAGATAGGTTTGAAGACATGGGCTAACTGGATTGACTCAAATATCAACCCC AACAAGACTCGTGTCTTCTTTACTACTATGTCCCCCACACACACGAGAAGTGAAGACTGGAACAACACAGAAGGGCTTAAGTGCTTCAATGAAACGAAAC CGGTATTGAAGAAGAAATATTGGGGAAGTGGTTCTGACAAACGAATGATGAGTGTGGTGGCCAGCATAGGAAAGAAAATGAAAGTTCCTGTTACTTTCAT CAACATAACACAGCTATCAGAGTACCGAATCGATGCTCACGCATCGGTCTACACTGAGACTGGAGGCAAATTGCTGACAGAAGAACAAAGGGCAGACCCA CTACATCATGCGGATTGCATACACTGGTGTTTACCAGGAGTTCCTGATACATGGAATCGGATATTCCTTGCTTATTTGTAG
AA sequence Show only first row Show all	>Potri.016G119100.1 pacid=42809262 polypeptide=Potri.016G119100.1.p locus=Potri.016G119100 ID=Potri.016G119100.1.v4.1 annot-version=v4.1 MSLAPSQSAAMKPSKGKLPISVVTIIICSFAFIALLYTDTSRSLFKLKSCPRRNPVKKSKDRTAEDKLKNFQMDDRFEFDPEECTVNTGKWMFNKTLKPL YTDRSCPYLDRQVSCVKNGRRDSDYRRWEWQPDDCTLPRFNPELALKKLRGKRLLFVGDSLQRGQWQSFVCLVEWIIPEDKKSMKEVGSHSVFRAKEYDA TIEFYWAPFLIESNTDHHIIADPKKRILKVDSIDKHAKHWGGVDFLVFNTYVWWMSGIRLKTLWGSFANGEEGYEELDTPVAYKIGLKTWANWIDSNINP NKTRVFFTTMSPTHTRSEDWNNTEGLKCFNETKPVLKKKYWGSGSDKRMMSVVASIGKKMKVPVTFINITQLSEYRIDAHASVYTETGGKLLTEEQRADP LHHADCIHWCLPGVPDTWNRIFLAYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	1.00	0.9584
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	1.41	0.9558
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	1.73	0.9477
AT2G31930			unknown protein		Potri.009G024700 [exp]	3.46	0.9388
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.008G180800 [exp]	3.46	0.9224
					Potri.008G115533 [exp]	4.89	0.9347
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	5.00	0.9373
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	5.83	0.9038
AT1G27850			unknown protein		Potri.010G056200 [exp]	7.48	0.9288
AT3G54880			unknown protein		Potri.010G227800 [exp]	9.38	0.9229

Compare expression of checked genes

Potri.016G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.