Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 1356 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102000 [exp] 1640 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.010G034800 [exp] 999 / 0 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002849 [exp] 1462 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10027814 [exp] 1323 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10037223 [exp] 958 / 0 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 923 / 0 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 763 / 0 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 254 / 2e-78 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF00962 [poplar] [flax] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Potri.016G119300.6 pacid=42809281 polypeptide=Potri.016G119300.6.p locus=Potri.016G119300 ID=Potri.016G119300.6.v4.1 annot-version=v4.1 ATGGAAGCGTACTCGCTGCATCTAGCGATGGCGGCTCTAGTAGGAGCATCATTTGTGGCTGTATCCGCTTATTATATGCACCGCAAAACCCTAAATCAAC TTCTCGAGTTCGCCAAGACGGTAGAGAGAGAACGAGAAAGAGACGACAACTCCGACGGCGGCGGCGGAGGAGGAGGAGGATCGTCGCCGCAGCATTTGAA GAAGCGCCGGAGTCACGGACGGAGGAAGGGAAGTAGCGGTTACTATAACAAGCGTGGCTCGGCTTCGTTACCGGACGTGACGGCGATATACGGTGGTGGA ATTGATGGAGAGGAGAAACGTAATGGTCAGGTGGTTTATGTCGAAGGGATTCCGGCTGGATTGCCGAGGCTTCATACTTTGCCTGAAGGGAAATCTTCTG GGCATATCAAGAGGCCTGGAAGTTTTATCAGACCAACTTCTCCAAAGTCTCCTGGTGCTAGTGCTAGTGCCTTTGACAGCGTGGAAGGATCAGATGATGA AGATAACATGACTGACAATTCTAAACTAGACACTACATATCTGCATGTTAATGGAAATGCTGATATAAAGGATGTTTTACCACAACACATTAATGCAAAT GGAGACCAAGTCCCTATACCTGCTTCAAGCATGATTCGATCCCATAGTGTGTCTGGTGACTTGCATGGTGTTCAGCCTGATCCTATTGCTGCTGATATTC TAAGGAAAGAACCAGAACAGGAAACTTTTGCACGACTTAAAATTTCTCCTATGGCAGAGGTGCCATCACCAGATGAAGTGGATTCCTATATAGTTCTTCA AGAATGTCTTGAAATGCGAAAAAGATATGTATTCAAGGAAGCAATCGCACCATGGGAGAAAGAAATTATTTCTGACCCCAGTACACCAAAGCCTAATCCT GACCCTTTCTCCTTTACACCAGAGGGAAAATCTGATCATTATTTTGAGATGCAAGATGGGGTAATCCATGTCTATCCAAATAAAGACTCTAAGGAAGAAC TTTTTCCTGTTGCTGATGCGACAACGTTTTTCACTGATTTGCATCACATACTTCGAGTTATTGCAATTGGAAATATCAGAACTCTATGTCATCATCGGTT GAATCTCCTAGAACAAAAATTCAACCTTCATTTGATGCTTAATGCGGATAGAGAGTTTCTTGCTCAGAAAAGTGCTCCACACCGTGACTTTTATAATGTC AGGAAAGTTGATACGCATGTTCATCATTCTGCATGCATGAACCAGAAACATCTTTTAAGGTTTATAAAGTCAAAACTGAGGAAAGAGCCTGATGAGGTTG TAATTTTTCGAGATGGAACATACTTGACATTGAAAGAAGTGTTTGAGAGTTTGGATTTGACTGGGTATGATCTCAATGTTGACCTTTTAGATGTTCACGC GGACAAGAGCACATTTCATCGCTTTGATAAGTTCAACCTGAAGTACAATCCTTGTGGTCAGAGTAGACTTAGGGAGATTTTCCTTAAACAAGACAATCTT ATCCAAGGCCGTTTCCTTGGTGAACTGACAAAACAAGTCTTTTCTGATCTTTCTGCAAGTAAATATCAGATGGCTGAATACAGAATATCAATATACGGTA GAAAACAGAGTGAATGGGACCAATTGGCTAGTTGGATAGTGAATAATGAATTGTACAGTGAAAATGTTGTTTGGTTAATCCAGCTTCCTCGACTGTACAA TATCTACAAGGAAATGGGGATTGTTACATCATTTCAGAATATTCTTGATAATATCTTCATTCCGCTTTTCGAGGTCACAATTGATCCAGATTCGCATCCT CAGTTGCATGTTTTCTTGAAACAGGTTGTTGGGCTGGACCTGGTTGATGATGAAAGCAAACCTGAAAGACGACCGACAAAGCACATGCCTACACCAACTC AATGGACCAATGTGTTCAATCCTGCATTTTCATATTATGTTTATTACTGTTATGCCAACCTCCACACATTAAACAAGCTTCGTGAGTCAAAGGGCATGAC AACTATCAAATTCCGTCCCCATTCTGGAGAGGCTGGCGATACTGACCATCTTGCTGCAACATTTCTTACATCTCATAATATTGCCCATGGGATCAATTTG AGGAAATCTCCAGTTCTTCAATATTTGTATTATCTAGCACAAATTGGCTTAGCTATGTCTCCTCTGAGCAACAATTCCTTATTTTTAGACTACCATAGGA ATCCTTTTCCTATGTTTTTCCAAAGGGGTCTCAATGTTTCCCTTTCTACTGATGATCCGCTCCAAATTCACTTAACAAAAGAGCCCTTGGTGGAAGAATA TAGCATAGCTGCTTCTGTGTGGAAGTTGAGTTCATGTGATCTGTGTGAGATTGCTCGAAATTCGGTCTACCAATCAGGTTTCTCACATGCTTTAAAGTCG CACTGGATTGGTAAAGAGTACTACAAGAGAGGACCAGACGGAAACGATATTCACAGGACAAATGTGCCTCATATCCGGGTGGAATTTCGAGATGCGATAT GGAGAGATGAGATGCAACAAGTTTATCTTGGCAAGGCCGTTATCCCTAAAGAAGTGGACAAGTAA
AA sequence Show only first row Show all	>Potri.016G119300.6 pacid=42809281 polypeptide=Potri.016G119300.6.p locus=Potri.016G119300 ID=Potri.016G119300.6.v4.1 annot-version=v4.1 MEAYSLHLAMAALVGASFVAVSAYYMHRKTLNQLLEFAKTVERERERDDNSDGGGGGGGGSSPQHLKKRRSHGRRKGSSGYYNKRGSASLPDVTAIYGGG IDGEEKRNGQVVYVEGIPAGLPRLHTLPEGKSSGHIKRPGSFIRPTSPKSPGASASAFDSVEGSDDEDNMTDNSKLDTTYLHVNGNADIKDVLPQHINAN GDQVPIPASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLKISPMAEVPSPDEVDSYIVLQECLEMRKRYVFKEAIAPWEKEIISDPSTPKPNP DPFSFTPEGKSDHYFEMQDGVIHVYPNKDSKEELFPVADATTFFTDLHHILRVIAIGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNV RKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNL IQGRFLGELTKQVFSDLSASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNIYKEMGIVTSFQNILDNIFIPLFEVTIDPDSHP QLHVFLKQVVGLDLVDDESKPERRPTKHMPTPTQWTNVFNPAFSYYVYYCYANLHTLNKLRESKGMTTIKFRPHSGEAGDTDHLAATFLTSHNIAHGINL RKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKS HWIGKEYYKRGPDGNDIHRTNVPHIRVEFRDAIWRDEMQQVYLGKAVIPKEVDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.016G119300 [exp]	0	1
AT5G04250			Cysteine proteinases superfami...		Potri.010G225400 [exp]	8.00	0.6944
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	10.39	0.6686	MAP1.3
AT1G61740			Sulfite exporter TauE/SafE fam...		Potri.011G030900 [exp]	12.00	0.7409
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	12.72	0.7705
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G025400 [exp]	16.18	0.7494
					Potri.019G102600 [exp]	16.27	0.7129
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	26.15	0.7102	RHD2.2
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.017G107200 [exp]	30.98	0.6803
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	31.62	0.7174
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	31.67	0.6261	COL3.2

Compare expression of checked genes

Potri.016G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.