Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51820 541 / 0 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) AT3G11945 56 / 3e-08 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT2G18950 55 / 4e-08 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102100 [exp] 591 / 0 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.018G022000 [exp] 55 / 5e-08 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.018G090700 [exp] 54 / 6e-08 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G197600 [exp] 53 / 1e-07 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.006G166100 [exp] 47 / 2e-05 AT2G18950 379 / 2e-130 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027815 [exp] 570 / 0 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10002850 [exp] 535 / 0 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 533 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10000126 [exp] 249 / 3e-82 AT3G51820 253 / 1e-83 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10016221 [exp] 54 / 8e-08 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10025472 [exp] 53 / 2e-07 AT2G18950 504 / 7e-179 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10029321 [exp] 53 / 3e-07 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10006961 [exp] 50 / 1e-06 AT2G18950 519 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF01040 [poplar] [flax] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.016G119400.1 pacid=42809005 polypeptide=Potri.016G119400.1.p locus=Potri.016G119400 ID=Potri.016G119400.1.v4.1 annot-version=v4.1 ATGGCGTCCGTACTCAACTCAGCTCTGTCCTTGAATTTATCAAACTTTAAAAGGAAACGAGTTCGAACTCAGTATCTTGTCTCTCCGCTTTCTCTTTCTC TCTCAAGGCGGAGAGTTACGATAGGAGCCGCAGAGACCGATGCAAATGAAGCAAAACCTCAGGCACCAGATAAGGCGCCGGATAGTGGTGGTGGTGGTTC TAGCTTTAACCAGCTTCTTGGCATTAAAGGAGCTGCTAAAGAAACTAATAAATGGAAGATTCGTCTTCAGCTTACAAAACCTGTTACTTGGCCTCCGTTG GTTTTGGGAGTAGTTTGTGGAGCTGCTGCTTCAGGAAACTTTGATTGGACTTTGGAGGATGTTGCCAAATCAATTGTTTGCATGCTTATGTCTGGACCAT TTCTTACTGGCTATACGCAGACGATTAATGATTACTATGACCGAGAGATTGATGCAATTAATGAACCTTATCGTCCAATTCCATCAGGGGTAATTTCCGA GAATGAGGTTATCACCCAAATCTGGATTCTGCTTCTAGGAGGCCTTGGCTTGGCTGGTTTACTGGATGTGTGGGCAGGGCATGACTTCCCTATAGTTTTT TACCTTGCTTTGGGTGGATCATTGGTTTCGTACATATACTCCGCTCCTCCTTTGAAGCTAAAACAAAATGGATGGATCGGAAACTTTGCTCTGGGAGCAA GCTATATCAGTTTGCCATGGTGGGCTGGTCAAGCTTTGTTTGGGACCCTCACACCTGACATAATTGTCCTAACACTCTTGTACAGCATAGCTGGGCTAGG TGTTGCTATTGTAAACGATTTTAAAAGTATTGAAGGAGATAGGCTACTTGGACTTCAGTCACTACCAGTAGCTTTTGGTGCTGAAACTGCTAAATGGATT TGTGTTGGTGCTATCGACATAACTCAGATATCCGTGGCTGGTTATCTGCTAGGAGCTGGTAAACCGTATTATGCCTTAGCCCTGCTCGGTTTGATAATTC CACAAGTTTTTTTTCAGTTTCAGTACTTCCTGAAGGACCCGGTGAAGTATGATGTTAGATATCAGGCAAGCGCGCAACCTTTTCTCGTGCTTGGTTTGCT GGTGACTGCTTTGGCAACTAACCATTGA
AA sequence Show only first row Show all	>Potri.016G119400.1 pacid=42809005 polypeptide=Potri.016G119400.1.p locus=Potri.016G119400 ID=Potri.016G119400.1.v4.1 annot-version=v4.1 MASVLNSALSLNLSNFKRKRVRTQYLVSPLSLSLSRRRVTIGAAETDANEAKPQAPDKAPDSGGGGSSFNQLLGIKGAAKETNKWKIRLQLTKPVTWPPL VLGVVCGAAASGNFDWTLEDVAKSIVCMLMSGPFLTGYTQTINDYYDREIDAINEPYRPIPSGVISENEVITQIWILLLGGLGLAGLLDVWAGHDFPIVF YLALGGSLVSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGVAIVNDFKSIEGDRLLGLQSLPVAFGAETAKWI CVGAIDITQISVAGYLLGAGKPYYALALLGLIIPQVFFQFQYFLKDPVKYDVRYQASAQPFLVLGLLVTALATNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.016G119400 [exp]	0	1
AT5G61750			RmlC-like cupins superfamily p...		Potri.015G109600 [exp]	3.31	0.8308
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.001G381500 [exp]	4.00	0.8171
AT5G50350			unknown protein		Potri.008G012000 [exp]	6.70	0.7469
AT2G44420			protein N-terminal asparagine ...		Potri.009G023200 [exp]	8.00	0.7383
AT5G40020			Pathogenesis-related thaumatin...		Potri.017G075500 [exp]	9.53	0.7794
AT1G26820		RNS3	ribonuclease 3 (.1)		Potri.008G086800 [exp]	10.95	0.7888	S.4
AT5G61750			RmlC-like cupins superfamily p...		Potri.012G111500 [exp]	12.80	0.7976
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.002G005700 [exp]	12.96	0.7863
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.005G256000 [exp]	18.24	0.7727	XCP2.1
AT1G58070			unknown protein		Potri.004G222800 [exp]	19.89	0.7593

Compare expression of checked genes

Potri.016G119400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.