Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01340 543 / 0 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT3G54110 114 / 2e-29 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 110 / 5e-28 Mitochondrial substrate carrier family protein (.1) AT2G37890 110 / 1e-27 Mitochondrial substrate carrier family protein (.1) AT5G58970 107 / 1e-26 ATUCP2 uncoupling protein 2 (.1.2) AT4G03115 104 / 8e-26 Mitochondrial substrate carrier family protein (.1) AT3G53940 102 / 1e-24 Mitochondrial substrate carrier family protein (.1) AT1G34065 101 / 2e-24 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G33820 99 / 9e-24 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G66380 99 / 1e-23 ATFOLT1 folate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110100 [exp] 112 / 1e-28 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G119650 [exp] 104 / 2e-28 AT5G01340 88 / 5e-23 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.006G095500 [exp] 109 / 1e-27 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 109 / 1e-27 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.003G053900 [exp] 108 / 2e-27 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 107 / 7e-27 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 105 / 8e-26 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.014G135530 [exp] 104 / 8e-26 AT4G03115 422 / 2e-149 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 104 / 1e-25 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027817 [exp] 549 / 0 AT5G01340 526 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10005045 [exp] 540 / 0 AT5G01340 518 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10035538 [exp] 111 / 3e-28 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 109 / 1e-27 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 108 / 2e-27 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 108 / 2e-27 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 105 / 3e-26 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10034104 [exp] 101 / 1e-24 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10024769 [exp] 100 / 3e-24 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 99 / 1e-23 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.016G119500.2 pacid=42808882 polypeptide=Potri.016G119500.2.p locus=Potri.016G119500 ID=Potri.016G119500.2.v4.1 annot-version=v4.1 ATGAGCCAAGAATCATCAAATGACAAGAAACCAACAATCCCTCCATACATGAAAGCTATATCAGGTTCTTTAGGAGGGGCTGTAGAGGCGAGTTGCTTGC AGCCAATTGATGTTATCAAGACAAGATTGCAGCTCGATAGGAGTGGGAATTACAAGGGAATAATCCATTGTGGGTCGACGATTGTGAAAACGGAAGGGGT CCGGGCTTTATGGAAAGGGCTGACACCGTTTGCTACTCACCTGACCTTGAAATATGCGCTTCGTATGGGGTCTAATGCAGTGTTTCAGTCCGCGTTTAAG GATTCGGAAACTGGCAAGTTGAGTAATCAAGGGAGGTTGATGTCCGGGTTTGGTGCTGGAGTTCTTGAGGCCCTTGCTATTGTTACTCCTTTTGAGGTTG TAAAAATTAGACTGCAGCAGCAGAAAGGGCTGAGTCATGAGCTTCTGAAGTACAAGGGTCCCATACATTGTGCTCGTACGATCATCCGTGAAGAAGGCTT TCTTGGGCTCTGGGCAGGGGCTGCCCCAACTGTCATGCGTAATGGGACAAACCAGGCAGCCATGTTTACAGCCAAAAATGCTTTTGATGTACTCTTGTGG AAGAAACACGAAGGTGATGGGAGAGTTCTCCAACCATGGCAGTCTATGATATCTGGATTTCTTGCTGGAACTGCGGGTCCAGTTTGCACTGGTCCGTTTG ATGTTGTCAAAACAAGGCTAATGGCTCAAAGCCGAGAAGGGGGTGAATTGAAGTACAAAGGCATGGTACACGCTATCAGAACAATATATGCTGAGGAAGG GCTTCTTGCCTTGTGGAAGGGACTGCTGCCTCGGCTTATGAGAATACCTCCTGGTCAAGCCATTATGTGGGCTGTAGCTGACCAAATTATCGGTCTTTAT GAGAGAAGATATCTACACATTGCATCTTCATAG
AA sequence Show only first row Show all	>Potri.016G119500.2 pacid=42808882 polypeptide=Potri.016G119500.2.p locus=Potri.016G119500 ID=Potri.016G119500.2.v4.1 annot-version=v4.1 MSQESSNDKKPTIPPYMKAISGSLGGAVEASCLQPIDVIKTRLQLDRSGNYKGIIHCGSTIVKTEGVRALWKGLTPFATHLTLKYALRMGSNAVFQSAFK DSETGKLSNQGRLMSGFGAGVLEALAIVTPFEVVKIRLQQQKGLSHELLKYKGPIHCARTIIREEGFLGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLW KKHEGDGRVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSREGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQIIGLY ERRYLHIASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119500 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.016G093944 [exp]	1.00	0.8074
AT1G10865			unknown protein		Potri.010G248800 [exp]	7.21	0.7560
AT3G01740			Mitochondrial ribosomal protei...		Potri.001G335600 [exp]	8.12	0.7881
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	11.31	0.7947
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.017G053500 [exp]	21.21	0.7048
AT3G55140			Pectin lyase-like superfamily ...		Potri.006G214400 [exp]	25.09	0.6988
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	30.03	0.7238
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.011G130300 [exp]	31.36	0.7258
AT5G50810		TIM8	translocase inner membrane sub...		Potri.012G103400 [exp]	33.22	0.7227
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	39.57	0.7195

Compare expression of checked genes

Potri.016G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.