Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30780 432 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G48000 376 / 2e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48730 121 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06430 96 / 5e-21 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53170 94 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 90 / 1e-18 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G35130 82 / 4e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63070 80 / 2e-15 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G03560 78 / 8e-15 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64583 77 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243600 [exp] 112 / 4e-26 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G153900 [exp] 105 / 7e-24 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G058300 [exp] 102 / 7e-23 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 101 / 1e-22 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G243000 [exp] 100 / 2e-22 AT2G30780 84 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 100 / 3e-22 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 89 / 2e-18 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 89 / 2e-18 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G029900 [exp] 81 / 3e-16 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029620 [exp] 465 / 2e-159 AT2G30780 455 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042683 [exp] 465 / 2e-159 AT2G30780 451 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000862 [exp] 107 / 1e-24 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 106 / 3e-24 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 103 / 4e-23 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 102 / 7e-23 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022128 [exp] 95 / 1e-20 AT2G15630 75 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027552 [exp] 92 / 2e-19 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035850 [exp] 92 / 2e-19 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10007619 [exp] 84 / 3e-17 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G119600.1 pacid=42809993 polypeptide=Potri.016G119600.1.p locus=Potri.016G119600 ID=Potri.016G119600.1.v4.1 annot-version=v4.1 ATGAAGCGAAGATTTTTCAAATTCTCAGACGCAGAGCTTATCTGCCTCCGAAGACCTTCCCCTTCCCCGACTCCCAGAACCATCACCACTTCTCCTTCCT CTTCAATCCTCGCCAAGCCCCCTTTTTACAGATTTTTCCAATCTTCACCCCCCTCCAACTCCGCCTCCGCCTCCGCCAAACACCTCATTTCCAACGTGAT CGGACTTTTTGTACACAAGCTCACTATTAATGATAATAGTGGTAGTAATAACAATAATAACGACATCAAATCCAAGGAGAGGAAGGATCCGACCAACAAG ATTTCTTCTCTGAGGAACAATAATAACGACCTCAAATCCAAGAAGAGGGAGGATCTGGTCAACAAGATTTCTTCTTTGAGGGACGAGCTGCTTCAAAATG TTGACATGGTTTTTCAGATTTTGGAAGAGACGAAAAAAGATGACCCCTCCTTGTTAACCAATTCATCCGCTTTTCTTGAGCTTTTGAAGCTCTTGCTTCT TTCTTCCCCTAAAGTAGCCCTCAAGATTTTTAATTGGAAAAGAACGCAAGCTGAGAACGATACTCCTATGACAGCAGCGGAGTATGCCAAGGGTATTATG ATTGCGGGTACAGATAAGAACGTGGATCTTGCAGTTGAGATATTTGATGAGGCTATAAAAAAGTGCATTAAGACGACCAGCATGTATAATGCACTGATGA CTGCGTGTATGTGTAATGGTTTGGCTGGTAAATGTGAATCATTGTTTCGGGAGATGAAAAGGGACGTAAAGTGTAGACCTTCAGTTGTAACATATAACAT TCTTGTATCAGTCTTTGGCCGCTTGATGCTGGTTGATAAAATGGAGGCAATATTCAAGGAGATGGAGGATTCACGTATTTCACCAAACTTGACAACATAC AACAATTTAATTAGTGGTTATGTGACTGTTTGGATGTGGGATAGTATGGAAAAAACTTTTCAAATGATGATTGCAGGCCCAGTTAAGCCAGATCTTAACA CCCACCTGCTAATGCTGCGAGGATATGCTCATTCTGGGCATCTGGAACAGATGGAACTGGTGTATGAATTGATAAAAGACCATGTTAATGCCAGGAGACT AACACTGATTAGGGCCATGATCTGTGCCTATTGTAAGAGTTCTATACCAGAAAGAGTTCAAAAGATTGAGGCACTGATGAGGCTGATTCCAGAAAAGGAA TATAGACCTTGGTTGAATGTTTTGTTGATTAAGCTTTATGCTGAAGAAGATAGGTTAGAGGGGATGGAGAACTCAATAAATGAGGCATTTAATCATAGAA TCACTATATCAACTGTAAGCATTATGCAGGCTATTATCACAAGTTATTTCAGATGCAATGCAGTTGATAAGCTGACAGATTTTATAAAACGTGCAACATA TGCGCGGTGGAGAATAATCCGGCCTCTATTTCACTGTAAAATGGTCATGTATGGAACACAAAAGCGCTTGGATGAAATGGAAAGTGTTCTTATTGAGATG GAGAATTGCAACTTGCCCCGCACAAAAAAGACATTTTGGATATTGTATAAAGCCTACTTGAATTGTGGTCAATGGTATAAGGTTGAGCAAGTAGCGGGAT TGATGTGCAAGCATGGATATGGAAATCCTTTTGATACATCTCCATTGTAA
AA sequence Show only first row Show all	>Potri.016G119600.1 pacid=42809993 polypeptide=Potri.016G119600.1.p locus=Potri.016G119600 ID=Potri.016G119600.1.v4.1 annot-version=v4.1 MKRRFFKFSDAELICLRRPSPSPTPRTITTSPSSSILAKPPFYRFFQSSPPSNSASASAKHLISNVIGLFVHKLTINDNSGSNNNNNDIKSKERKDPTNK ISSLRNNNNDLKSKKREDLVNKISSLRDELLQNVDMVFQILEETKKDDPSLLTNSSAFLELLKLLLLSSPKVALKIFNWKRTQAENDTPMTAAEYAKGIM IAGTDKNVDLAVEIFDEAIKKCIKTTSMYNALMTACMCNGLAGKCESLFREMKRDVKCRPSVVTYNILVSVFGRLMLVDKMEAIFKEMEDSRISPNLTTY NNLISGYVTVWMWDSMEKTFQMMIAGPVKPDLNTHLLMLRGYAHSGHLEQMELVYELIKDHVNARRLTLIRAMICAYCKSSIPERVQKIEALMRLIPEKE YRPWLNVLLIKLYAEEDRLEGMENSINEAFNHRITISTVSIMQAIITSYFRCNAVDKLTDFIKRATYARWRIIRPLFHCKMVMYGTQKRLDEMESVLIEM ENCNLPRTKKTFWILYKAYLNCGQWYKVEQVAGLMCKHGYGNPFDTSPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	0	1
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	1.00	0.8622	UBP25.1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	3.16	0.8190
					Potri.001G247100 [exp]	6.00	0.8065
AT3G19780			unknown protein		Potri.007G070400 [exp]	14.42	0.7801
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	15.19	0.7987
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	15.58	0.7542	Pt-UBP5.3
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.008G067600 [exp]	15.74	0.7508
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	17.54	0.8001
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	21.16	0.7864
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	26.83	0.7993

Compare expression of checked genes

Potri.016G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.